miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18271 3' -59.8 NC_004681.1 + 65075 0.66 0.570718
Target:  5'- cCCGCucgGGUgGUCGCcGAggUCGGCCUg -3'
miRNA:   3'- aGGCG---CCG-CAGUGcCUuuGGCCGGAa -5'
18271 3' -59.8 NC_004681.1 + 25823 0.66 0.569684
Target:  5'- aCCGCGGUGcUCAUGGcaauccaGGACgGGCUc- -3'
miRNA:   3'- aGGCGCCGC-AGUGCC-------UUUGgCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 49432 0.66 0.56452
Target:  5'- cCCGCGGCGcCgccgugGCGGAcggugagguugugcaGACCGcccGCCUUg -3'
miRNA:   3'- aGGCGCCGCaG------UGCCU---------------UUGGC---CGGAA- -5'
18271 3' -59.8 NC_004681.1 + 33402 0.66 0.560398
Target:  5'- gUCC-CGGCGUacacCGCGGcgcGACCGGCg-- -3'
miRNA:   3'- -AGGcGCCGCA----GUGCCu--UUGGCCGgaa -5'
18271 3' -59.8 NC_004681.1 + 14767 0.66 0.539921
Target:  5'- uUCCGUGaCGcCGCGGAcGCCcuGGCCa- -3'
miRNA:   3'- -AGGCGCcGCaGUGCCUuUGG--CCGGaa -5'
18271 3' -59.8 NC_004681.1 + 66850 0.66 0.539921
Target:  5'- --gGCGGCGUUGCc---ACCGGCCUUc -3'
miRNA:   3'- aggCGCCGCAGUGccuuUGGCCGGAA- -5'
18271 3' -59.8 NC_004681.1 + 26964 0.66 0.538904
Target:  5'- gCCGCcauagguGGCGg--UGGGGACCGGCCc- -3'
miRNA:   3'- aGGCG-------CCGCaguGCCUUUGGCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 614 0.66 0.529777
Target:  5'- cUCGCGGC--CGCGGAAGauGGCCg- -3'
miRNA:   3'- aGGCGCCGcaGUGCCUUUggCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 49228 0.66 0.529777
Target:  5'- cCCGCGuCGUCuuGGucACCGGCUc- -3'
miRNA:   3'- aGGCGCcGCAGugCCuuUGGCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 33276 0.66 0.529777
Target:  5'- uUCCGCugccgGGUGUCAUcGAcGCCGGUCg- -3'
miRNA:   3'- -AGGCG-----CCGCAGUGcCUuUGGCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 41964 0.67 0.523724
Target:  5'- cCUGCgagguaGGCGUgggacaggucggcucCGCGGAGAUCGGCCc- -3'
miRNA:   3'- aGGCG------CCGCA---------------GUGCCUUUGGCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 56411 0.67 0.5187
Target:  5'- uUCCGCaGCG-CACaccuguuGGAGGCgGGCCg- -3'
miRNA:   3'- -AGGCGcCGCaGUG-------CCUUUGgCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 30985 0.67 0.509706
Target:  5'- gUCCGCguacagGGUGUCGCGGGgcuccAGCgGGUCg- -3'
miRNA:   3'- -AGGCG------CCGCAGUGCCU-----UUGgCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 30662 0.67 0.509706
Target:  5'- cCCGCGGaCGcCGCGGucAAGCUcGCCUUc -3'
miRNA:   3'- aGGCGCC-GCaGUGCC--UUUGGcCGGAA- -5'
18271 3' -59.8 NC_004681.1 + 21924 0.67 0.509706
Target:  5'- gUCCaaGGUGUaUGCGGAGgcGCCGGUCUg -3'
miRNA:   3'- -AGGcgCCGCA-GUGCCUU--UGGCCGGAa -5'
18271 3' -59.8 NC_004681.1 + 53512 0.67 0.48996
Target:  5'- aCCGCGGUGacaUCGCGGGcgucaAGCucaaCGGCCa- -3'
miRNA:   3'- aGGCGCCGC---AGUGCCU-----UUG----GCCGGaa -5'
18271 3' -59.8 NC_004681.1 + 61846 0.67 0.480222
Target:  5'- gCCGCGGUcuGguggCGCGcGAGGgCGGCCUc -3'
miRNA:   3'- aGGCGCCG--Ca---GUGC-CUUUgGCCGGAa -5'
18271 3' -59.8 NC_004681.1 + 39327 0.68 0.447849
Target:  5'- gCCGCGGCG-CACGGugagcugacagucGACCaGGCUg- -3'
miRNA:   3'- aGGCGCCGCaGUGCCu------------UUGG-CCGGaa -5'
18271 3' -59.8 NC_004681.1 + 17819 0.68 0.442262
Target:  5'- -aCGCGGCGgcCGCGcaaGgcACCGGCCUc -3'
miRNA:   3'- agGCGCCGCa-GUGC---CuuUGGCCGGAa -5'
18271 3' -59.8 NC_004681.1 + 6547 0.68 0.442262
Target:  5'- aCCGaGGCGg-GCGGAGACUGGUCc- -3'
miRNA:   3'- aGGCgCCGCagUGCCUUUGGCCGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.