miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18280 3' -58.6 NC_004681.1 + 74614 0.66 0.601982
Target:  5'- -gCACUGUGC-GCACGCu---CUGGCg -3'
miRNA:   3'- caGUGGCGCGuCGUGCGccauGACCG- -5'
18280 3' -58.6 NC_004681.1 + 70191 0.7 0.378715
Target:  5'- ---cCCGUGU-GCGCGCGGUcucugaugccuACUGGCa -3'
miRNA:   3'- caguGGCGCGuCGUGCGCCA-----------UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 67051 0.69 0.46007
Target:  5'- uGUCGCCuucgaGCuCGGCGCGCGGcACcagGGCc -3'
miRNA:   3'- -CAGUGG-----CGcGUCGUGCGCCaUGa--CCG- -5'
18280 3' -58.6 NC_004681.1 + 66539 0.66 0.633638
Target:  5'- -aCGCCGCgGgAGU-CGCGGUAC-GGUg -3'
miRNA:   3'- caGUGGCG-CgUCGuGCGCCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 64936 0.69 0.431896
Target:  5'- gGUCGCgGCGCAGguaccaguccCACGgGGUGCccucggaGGCg -3'
miRNA:   3'- -CAGUGgCGCGUC----------GUGCgCCAUGa------CCG- -5'
18280 3' -58.6 NC_004681.1 + 63525 0.69 0.42273
Target:  5'- -aCAUCG-GCAaGCGCGCGGUAaUGGUu -3'
miRNA:   3'- caGUGGCgCGU-CGUGCGCCAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 61857 0.69 0.42273
Target:  5'- --gGCCGaugGCGGC-CGCGGU-CUGGUg -3'
miRNA:   3'- cagUGGCg--CGUCGuGCGCCAuGACCG- -5'
18280 3' -58.6 NC_004681.1 + 60206 0.66 0.601983
Target:  5'- -cCGCCGCGCGGggauCACGCc-UAgUGGCg -3'
miRNA:   3'- caGUGGCGCGUC----GUGCGccAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 57902 0.73 0.241061
Target:  5'- uUCGCCaccucggcgGCGCGGCGCGUGGUcgcggucuccGgUGGCg -3'
miRNA:   3'- cAGUGG---------CGCGUCGUGCGCCA----------UgACCG- -5'
18280 3' -58.6 NC_004681.1 + 57804 0.72 0.279416
Target:  5'- -gCGCCGCGCcgccgagguGGCGaaggaGCGGgGCUGGCc -3'
miRNA:   3'- caGUGGCGCG---------UCGUg----CGCCaUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 57403 0.66 0.612521
Target:  5'- cUCAgCGCGCuc--CGCGaUGCUGGCg -3'
miRNA:   3'- cAGUgGCGCGucguGCGCcAUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 57118 0.68 0.48919
Target:  5'- gGUCAauGagaGCGGCuacCGCGGUACcGGCu -3'
miRNA:   3'- -CAGUggCg--CGUCGu--GCGCCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 56854 0.66 0.644198
Target:  5'- cUCGCCcCGCGGCACGUcguaGGUGuagcccuuCUGGa -3'
miRNA:   3'- cAGUGGcGCGUCGUGCG----CCAU--------GACCg -5'
18280 3' -58.6 NC_004681.1 + 52978 0.77 0.140094
Target:  5'- uGUCGCCGCgGCucgGGCACGCGGgcagGCcgaUGGCc -3'
miRNA:   3'- -CAGUGGCG-CG---UCGUGCGCCa---UG---ACCG- -5'
18280 3' -58.6 NC_004681.1 + 52952 0.71 0.33011
Target:  5'- cGUCACCGaCGUGGcCugGCag-GCUGGCg -3'
miRNA:   3'- -CAGUGGC-GCGUC-GugCGccaUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 49329 0.67 0.570539
Target:  5'- cUCACCGUccgccacgGCGGCGcCGCGGgcgcugaccACUGGg -3'
miRNA:   3'- cAGUGGCG--------CGUCGU-GCGCCa--------UGACCg -5'
18280 3' -58.6 NC_004681.1 + 48653 0.69 0.450569
Target:  5'- -aCACCGCcucCAcGCugGCGGgaaccCUGGCg -3'
miRNA:   3'- caGUGGCGc--GU-CGugCGCCau---GACCG- -5'
18280 3' -58.6 NC_004681.1 + 47234 0.66 0.601982
Target:  5'- --aACuCGCGCAGUucgGCGCGGccCUcGGCg -3'
miRNA:   3'- cagUG-GCGCGUCG---UGCGCCauGA-CCG- -5'
18280 3' -58.6 NC_004681.1 + 46892 0.67 0.549796
Target:  5'- uUCACCGUcuucgggcucGCGGCGacUGGUucGCUGGCa -3'
miRNA:   3'- cAGUGGCG----------CGUCGUgcGCCA--UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 42975 0.66 0.601982
Target:  5'- cUCGgugUCGCGCAgGCACGCGcUGCaGGUg -3'
miRNA:   3'- cAGU---GGCGCGU-CGUGCGCcAUGaCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.