miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18280 3' -58.6 NC_004681.1 + 19912 1.11 0.00047
Target:  5'- gGUCACCGCGCAGCACGCGGUACUGGCg -3'
miRNA:   3'- -CAGUGGCGCGUCGUGCGCCAUGACCG- -5'
18280 3' -58.6 NC_004681.1 + 34434 0.68 0.499089
Target:  5'- -aCGCCGcCGCGGCGuaagacuuCG-GGUGCUGGg -3'
miRNA:   3'- caGUGGC-GCGUCGU--------GCgCCAUGACCg -5'
18280 3' -58.6 NC_004681.1 + 11219 0.68 0.509075
Target:  5'- -cCAgUGUGUGcGCACGCGGUGCgaauuccGGCa -3'
miRNA:   3'- caGUgGCGCGU-CGUGCGCCAUGa------CCG- -5'
18280 3' -58.6 NC_004681.1 + 28268 0.66 0.644198
Target:  5'- cGUCACCuGCGuCAGUGC-CGGUGCc-GCu -3'
miRNA:   3'- -CAGUGG-CGC-GUCGUGcGCCAUGacCG- -5'
18280 3' -58.6 NC_004681.1 + 20263 0.72 0.31422
Target:  5'- aUCACCgaGCGCAGCcggggcaGCGUGGUGagcaugacgacCUGGCc -3'
miRNA:   3'- cAGUGG--CGCGUCG-------UGCGCCAU-----------GACCG- -5'
18280 3' -58.6 NC_004681.1 + 40485 0.7 0.361991
Target:  5'- -aCACCG-GCcacGCugGCGGUgccgcucuuGCUGGCg -3'
miRNA:   3'- caGUGGCgCGu--CGugCGCCA---------UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 70191 0.7 0.378715
Target:  5'- ---cCCGUGU-GCGCGCGGUcucugaugccuACUGGCa -3'
miRNA:   3'- caguGGCGCGuCGUGCGCCA-----------UGACCG- -5'
18280 3' -58.6 NC_004681.1 + 2934 0.7 0.387269
Target:  5'- gGUgACCGUGUAGCG-GCGGUccccGCgGGCu -3'
miRNA:   3'- -CAgUGGCGCGUCGUgCGCCA----UGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 29190 0.69 0.423641
Target:  5'- cGUUACCGCGCcguuaauccuguuauGCGCGUGGU--UGGUc -3'
miRNA:   3'- -CAGUGGCGCGu--------------CGUGCGCCAugACCG- -5'
18280 3' -58.6 NC_004681.1 + 26332 0.68 0.499089
Target:  5'- -cCACCGCGUAGgGgGCGGgcaucGCcgccgUGGCg -3'
miRNA:   3'- caGUGGCGCGUCgUgCGCCa----UG-----ACCG- -5'
18280 3' -58.6 NC_004681.1 + 67051 0.69 0.46007
Target:  5'- uGUCGCCuucgaGCuCGGCGCGCGGcACcagGGCc -3'
miRNA:   3'- -CAGUGG-----CGcGUCGUGCGCCaUGa--CCG- -5'
18280 3' -58.6 NC_004681.1 + 61857 0.69 0.42273
Target:  5'- --gGCCGaugGCGGC-CGCGGU-CUGGUg -3'
miRNA:   3'- cagUGGCg--CGUCGuGCGCCAuGACCG- -5'
18280 3' -58.6 NC_004681.1 + 52978 0.77 0.140094
Target:  5'- uGUCGCCGCgGCucgGGCACGCGGgcagGCcgaUGGCc -3'
miRNA:   3'- -CAGUGGCG-CG---UCGUGCGCCa---UG---ACCG- -5'
18280 3' -58.6 NC_004681.1 + 41677 0.68 0.479385
Target:  5'- aUCGCCGUGCGcuGCcUGCGGgg-UGGCg -3'
miRNA:   3'- cAGUGGCGCGU--CGuGCGCCaugACCG- -5'
18280 3' -58.6 NC_004681.1 + 39930 0.74 0.235113
Target:  5'- --gGgCGCGguGCGCGCGGUGC-GGUc -3'
miRNA:   3'- cagUgGCGCguCGUGCGCCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 12504 0.7 0.403869
Target:  5'- cGUCACCggcucaccgacgaGCGUcGC-CGCGGUGgUGGUg -3'
miRNA:   3'- -CAGUGG-------------CGCGuCGuGCGCCAUgACCG- -5'
18280 3' -58.6 NC_004681.1 + 57118 0.68 0.48919
Target:  5'- gGUCAauGagaGCGGCuacCGCGGUACcGGCu -3'
miRNA:   3'- -CAGUggCg--CGUCGu--GCGCCAUGaCCG- -5'
18280 3' -58.6 NC_004681.1 + 2437 0.68 0.509075
Target:  5'- uGUUGgCGCGCGGCACGCaGaagugGGCg -3'
miRNA:   3'- -CAGUgGCGCGUCGUGCGcCauga-CCG- -5'
18280 3' -58.6 NC_004681.1 + 57902 0.73 0.241061
Target:  5'- uUCGCCaccucggcgGCGCGGCGCGUGGUcgcggucuccGgUGGCg -3'
miRNA:   3'- cAGUGG---------CGCGUCGUGCGCCA----------UgACCG- -5'
18280 3' -58.6 NC_004681.1 + 42463 0.7 0.378715
Target:  5'- -aCGCCuccgauGCGCGGCACuuGCGGcUGgUGGCa -3'
miRNA:   3'- caGUGG------CGCGUCGUG--CGCC-AUgACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.