miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18280 5' -59.5 NC_004681.1 + 3026 0.66 0.55603
Target:  5'- -cAGCGGcaauGCC-CGCACCcGCGgcgCCAa -3'
miRNA:   3'- aaUCGCCu---CGGcGUGUGGuCGCa--GGU- -5'
18280 5' -59.5 NC_004681.1 + 40473 0.66 0.545614
Target:  5'- cUGGCGGuGCCGCucuUGCUggcGGUGUUCAc -3'
miRNA:   3'- aAUCGCCuCGGCGu--GUGG---UCGCAGGU- -5'
18280 5' -59.5 NC_004681.1 + 62965 0.66 0.545614
Target:  5'- gUGGCGGcGGCgGCGCGagCAGCuuuccGUCCAu -3'
miRNA:   3'- aAUCGCC-UCGgCGUGUg-GUCG-----CAGGU- -5'
18280 5' -59.5 NC_004681.1 + 69010 0.66 0.535261
Target:  5'- gUGGCGGcGGCCGUgacgauggucaGCGCCucgauGGCGUCg- -3'
miRNA:   3'- aAUCGCC-UCGGCG-----------UGUGG-----UCGCAGgu -5'
18280 5' -59.5 NC_004681.1 + 46929 0.66 0.535261
Target:  5'- -gGGCGGuuGCCGCGgGgCuGCGUCUc -3'
miRNA:   3'- aaUCGCCu-CGGCGUgUgGuCGCAGGu -5'
18280 5' -59.5 NC_004681.1 + 3020 0.66 0.535261
Target:  5'- gUGGCGGuGCCGuCGC-CCAGCcaggCCc -3'
miRNA:   3'- aAUCGCCuCGGC-GUGuGGUCGca--GGu -5'
18280 5' -59.5 NC_004681.1 + 17820 0.66 0.535261
Target:  5'- --cGCGGcGGCCGCgcaagGCACCGGCcucaCCAa -3'
miRNA:   3'- aauCGCC-UCGGCG-----UGUGGUCGca--GGU- -5'
18280 5' -59.5 NC_004681.1 + 38796 0.66 0.535261
Target:  5'- --uGCGG-GCCGCGCGCaa--GUCCGc -3'
miRNA:   3'- aauCGCCuCGGCGUGUGgucgCAGGU- -5'
18280 5' -59.5 NC_004681.1 + 49547 0.66 0.534229
Target:  5'- gUAGCgGGGGCCGUggaaGCACUGGCcggugcaGUCCc -3'
miRNA:   3'- aAUCG-CCUCGGCG----UGUGGUCG-------CAGGu -5'
18280 5' -59.5 NC_004681.1 + 22102 0.66 0.524978
Target:  5'- --uGCaGcGCCGCAuCACCGGCuUCCAg -3'
miRNA:   3'- aauCGcCuCGGCGU-GUGGUCGcAGGU- -5'
18280 5' -59.5 NC_004681.1 + 66937 0.66 0.514771
Target:  5'- gUGGCGGcccugguGCCGCGCGCCgAGC-UCgAa -3'
miRNA:   3'- aAUCGCCu------CGGCGUGUGG-UCGcAGgU- -5'
18280 5' -59.5 NC_004681.1 + 44699 0.66 0.504645
Target:  5'- -cGGCGGcGUcaCGCGCACCAagcGCGUCa- -3'
miRNA:   3'- aaUCGCCuCG--GCGUGUGGU---CGCAGgu -5'
18280 5' -59.5 NC_004681.1 + 40378 0.66 0.504645
Target:  5'- -cAGCaaGAGCgGCAcCGCCAGCGUggCCGg -3'
miRNA:   3'- aaUCGc-CUCGgCGU-GUGGUCGCA--GGU- -5'
18280 5' -59.5 NC_004681.1 + 22028 0.66 0.504645
Target:  5'- -cAGCGcGAGCgCGCGCaACCAa-GUCCAa -3'
miRNA:   3'- aaUCGC-CUCG-GCGUG-UGGUcgCAGGU- -5'
18280 5' -59.5 NC_004681.1 + 23849 0.67 0.494607
Target:  5'- --uGCGGAGCUGCACuccgACgacuuccucgggCAGCGUCUc -3'
miRNA:   3'- aauCGCCUCGGCGUG----UG------------GUCGCAGGu -5'
18280 5' -59.5 NC_004681.1 + 66953 0.67 0.48466
Target:  5'- ----aGG-GCUGCuCGCCAGUGUCCGg -3'
miRNA:   3'- aaucgCCuCGGCGuGUGGUCGCAGGU- -5'
18280 5' -59.5 NC_004681.1 + 34224 0.67 0.48466
Target:  5'- gUGGCGGAGuUCGUcCAUCuGUGUCCu -3'
miRNA:   3'- aAUCGCCUC-GGCGuGUGGuCGCAGGu -5'
18280 5' -59.5 NC_004681.1 + 1158 0.67 0.48466
Target:  5'- -gGGCuccaucGGGCCGUACAuccucUCGGCGUCCGc -3'
miRNA:   3'- aaUCGc-----CUCGGCGUGU-----GGUCGCAGGU- -5'
18280 5' -59.5 NC_004681.1 + 17397 0.67 0.47481
Target:  5'- --cGCGG-GCaCGCGCGCCagcagGGCGUCg- -3'
miRNA:   3'- aauCGCCuCG-GCGUGUGG-----UCGCAGgu -5'
18280 5' -59.5 NC_004681.1 + 50472 0.68 0.43646
Target:  5'- gUAGCGGuAGCCGCccuCgACCA-CGUCCc -3'
miRNA:   3'- aAUCGCC-UCGGCGu--G-UGGUcGCAGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.