miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18285 3' -56.4 NC_004681.1 + 69238 0.77 0.202687
Target:  5'- gGCCAGCgcgucaucggcuGGGUcugUCCgacACCUGAugGGCCg -3'
miRNA:   3'- gCGGUUG------------CCCA---AGG---UGGACUugCCGG- -5'
18285 3' -56.4 NC_004681.1 + 64714 0.68 0.636638
Target:  5'- aCGCUggUGGGUccgcCCACCUGGAacuacccaGCCu -3'
miRNA:   3'- -GCGGuuGCCCAa---GGUGGACUUgc------CGG- -5'
18285 3' -56.4 NC_004681.1 + 62792 0.67 0.689358
Target:  5'- uCGCCAACGccaaGGUgaaCCGCCUGAcugACGauGUCg -3'
miRNA:   3'- -GCGGUUGC----CCAa--GGUGGACU---UGC--CGG- -5'
18285 3' -56.4 NC_004681.1 + 62541 0.74 0.33161
Target:  5'- gGCCAuuCGGGUUU--CCUGGGCGGCg -3'
miRNA:   3'- gCGGUu-GCCCAAGguGGACUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 61974 0.66 0.750821
Target:  5'- gCGUCAucGCGGGcaugcaccugUUCgACCaGAucGCGGCCu -3'
miRNA:   3'- -GCGGU--UGCCC----------AAGgUGGaCU--UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 61798 0.69 0.583811
Target:  5'- aGCUucaGGCGGGuUUCCAUCUuGGagaccucggcgGCGGCCu -3'
miRNA:   3'- gCGG---UUGCCC-AAGGUGGA-CU-----------UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 61744 0.67 0.678877
Target:  5'- cCGCCcuCGcGcgCCACCaGAccGCGGCCg -3'
miRNA:   3'- -GCGGuuGCcCaaGGUGGaCU--UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 60136 0.67 0.720455
Target:  5'- uGCCAgguGCGGGagCCGCC-GAA-GGCg -3'
miRNA:   3'- gCGGU---UGCCCaaGGUGGaCUUgCCGg -5'
18285 3' -56.4 NC_004681.1 + 60000 0.67 0.689358
Target:  5'- uGCCuGCGGG-UCCucaaGCCcGGugGGCa -3'
miRNA:   3'- gCGGuUGCCCaAGG----UGGaCUugCCGg -5'
18285 3' -56.4 NC_004681.1 + 59152 0.72 0.412077
Target:  5'- aCGCCGagaaGCGGGacggcaccuacgucgCCACCUaugucacGGACGGCCu -3'
miRNA:   3'- -GCGGU----UGCCCaa-------------GGUGGA-------CUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 59098 0.71 0.462332
Target:  5'- gCGCCcucccccACGaGGUcuUCgagCACCUGGGCGGCCu -3'
miRNA:   3'- -GCGGu------UGC-CCA--AG---GUGGACUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 58666 0.68 0.647226
Target:  5'- gCGCC-GCGGGccaCACCUGccuGAUGGCg -3'
miRNA:   3'- -GCGGuUGCCCaagGUGGAC---UUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 53030 0.68 0.626045
Target:  5'- uGUCGAUGGGUaggcacUCCGCCgagGuccucguGCGGCUc -3'
miRNA:   3'- gCGGUUGCCCA------AGGUGGa--Cu------UGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 51675 0.78 0.197037
Target:  5'- uGCCggUGGGUugcUCCACCUcggagagGAACuGGCCa -3'
miRNA:   3'- gCGGuuGCCCA---AGGUGGA-------CUUG-CCGG- -5'
18285 3' -56.4 NC_004681.1 + 50072 0.67 0.678877
Target:  5'- uGCCuGCGGGUcgacgUCCAggaCUacaaGGACGGCUa -3'
miRNA:   3'- gCGGuUGCCCA-----AGGUg--GA----CUUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 49435 0.67 0.699787
Target:  5'- gCGCCcGCGGcg-CCGCCguggcGGACGGUg -3'
miRNA:   3'- -GCGGuUGCCcaaGGUGGa----CUUGCCGg -5'
18285 3' -56.4 NC_004681.1 + 48792 0.67 0.699787
Target:  5'- gGCCGucgagggcGCGGGUgaCAUCUGAugGuuGCCg -3'
miRNA:   3'- gCGGU--------UGCCCAagGUGGACUugC--CGG- -5'
18285 3' -56.4 NC_004681.1 + 48664 0.66 0.780182
Target:  5'- aCGCUGGCGGGaa-C-CCUGGcgGGCCa -3'
miRNA:   3'- -GCGGUUGCCCaagGuGGACUugCCGG- -5'
18285 3' -56.4 NC_004681.1 + 47465 0.7 0.552496
Target:  5'- uGCCAuCaGGUcgCCGCgUGcGACGGCCa -3'
miRNA:   3'- gCGGUuGcCCAa-GGUGgAC-UUGCCGG- -5'
18285 3' -56.4 NC_004681.1 + 46471 0.68 0.668355
Target:  5'- uGUCAucgauGCGGGUccggUCCACCUccaGAcuGgGGCCg -3'
miRNA:   3'- gCGGU-----UGCCCA----AGGUGGA---CU--UgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.