miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18295 5' -61.4 NC_004681.1 + 15664 0.66 0.51094
Target:  5'- aCGGUcAUGCCCuGGUCGGu-GCCGg- -3'
miRNA:   3'- -GCCGcUACGGGcUCGGCCuuCGGCag -5'
18295 5' -61.4 NC_004681.1 + 12961 0.66 0.508978
Target:  5'- gCGGCcguaGUGCCCGAcguacccagcugcagGCUGGAcguaccggcgccaauGGCCGUa -3'
miRNA:   3'- -GCCGc---UACGGGCU---------------CGGCCU---------------UCGGCAg -5'
18295 5' -61.4 NC_004681.1 + 16578 0.66 0.501162
Target:  5'- gGGCGcgGCgCCGAGUaguccgugGGggGCUGg- -3'
miRNA:   3'- gCCGCuaCG-GGCUCGg-------CCuuCGGCag -5'
18295 5' -61.4 NC_004681.1 + 64497 0.66 0.501162
Target:  5'- uGGCGaAUGCCucguacaggaCGAuGCCGGuGGCCauuGUCg -3'
miRNA:   3'- gCCGC-UACGG----------GCU-CGGCCuUCGG---CAG- -5'
18295 5' -61.4 NC_004681.1 + 65169 0.66 0.501162
Target:  5'- uCGGCGAccaCCCGAGCgGGGA-UCGUg -3'
miRNA:   3'- -GCCGCUac-GGGCUCGgCCUUcGGCAg -5'
18295 5' -61.4 NC_004681.1 + 40130 0.66 0.501162
Target:  5'- uCGGUGAccGCCCGGGacaGGcAGGCCG-Cg -3'
miRNA:   3'- -GCCGCUa-CGGGCUCgg-CC-UUCGGCaG- -5'
18295 5' -61.4 NC_004681.1 + 13407 0.66 0.501162
Target:  5'- gCGGCGAcgGCCUGGaCCGuGAgcAGCUGUUc -3'
miRNA:   3'- -GCCGCUa-CGGGCUcGGC-CU--UCGGCAG- -5'
18295 5' -61.4 NC_004681.1 + 38153 0.66 0.501162
Target:  5'- gCGaGCGAgucaGcCCCGAgGCCGGAuGGCCcUCg -3'
miRNA:   3'- -GC-CGCUa---C-GGGCU-CGGCCU-UCGGcAG- -5'
18295 5' -61.4 NC_004681.1 + 52894 0.66 0.488576
Target:  5'- cCGGCGAcgaaauccaaauccUGCCCGAcuCCG--AGCCGUUc -3'
miRNA:   3'- -GCCGCU--------------ACGGGCUc-GGCcuUCGGCAG- -5'
18295 5' -61.4 NC_004681.1 + 17941 0.66 0.481861
Target:  5'- cCGG-GgcGCCCGGGuuGGugAGGCCGg- -3'
miRNA:   3'- -GCCgCuaCGGGCUCggCC--UUCGGCag -5'
18295 5' -61.4 NC_004681.1 + 48736 0.66 0.481861
Target:  5'- aGGCGGUGUcauugCCGAuGUagUGGuAGCCGUCc -3'
miRNA:   3'- gCCGCUACG-----GGCU-CG--GCCuUCGGCAG- -5'
18295 5' -61.4 NC_004681.1 + 20098 0.66 0.472346
Target:  5'- -aGCGccaaGUGCCCGgacugaccGGCCuGGAGGuuGUCg -3'
miRNA:   3'- gcCGC----UACGGGC--------UCGG-CCUUCggCAG- -5'
18295 5' -61.4 NC_004681.1 + 52311 0.66 0.472346
Target:  5'- uCGGgGAUGgCgGGGCCGuucuuGGCCGUg -3'
miRNA:   3'- -GCCgCUACgGgCUCGGCcu---UCGGCAg -5'
18295 5' -61.4 NC_004681.1 + 71920 0.66 0.462927
Target:  5'- cCGaCGAUGUCCucaucGGCCGGAuuGCCGUa -3'
miRNA:   3'- -GCcGCUACGGGc----UCGGCCUu-CGGCAg -5'
18295 5' -61.4 NC_004681.1 + 16125 0.67 0.453607
Target:  5'- gCGGCGgcGCCCuuGCCaGcAGCCGg- -3'
miRNA:   3'- -GCCGCuaCGGGcuCGGcCuUCGGCag -5'
18295 5' -61.4 NC_004681.1 + 51600 0.67 0.44439
Target:  5'- uGGCGucgGUGUagCCGAGCUGGcggcAGCgGUCg -3'
miRNA:   3'- gCCGC---UACG--GGCUCGGCCu---UCGgCAG- -5'
18295 5' -61.4 NC_004681.1 + 12290 0.67 0.44439
Target:  5'- gCGGgGAaGCCCGAcGCCGGGu-CCGg- -3'
miRNA:   3'- -GCCgCUaCGGGCU-CGGCCUucGGCag -5'
18295 5' -61.4 NC_004681.1 + 42394 0.67 0.426278
Target:  5'- uGaCGAUGCucCCGAGCUGGGccuucuuccaGGCCGUg -3'
miRNA:   3'- gCcGCUACG--GGCUCGGCCU----------UCGGCAg -5'
18295 5' -61.4 NC_004681.1 + 28826 0.67 0.426278
Target:  5'- aGGUGAUGCCaguuacGCCGGucacuGAGCgGUCc -3'
miRNA:   3'- gCCGCUACGGgcu---CGGCC-----UUCGgCAG- -5'
18295 5' -61.4 NC_004681.1 + 24763 0.67 0.417387
Target:  5'- uGGCGAUcaGCUCGGGCgGGuuGUCGg- -3'
miRNA:   3'- gCCGCUA--CGGGCUCGgCCuuCGGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.