miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18315 3' -54.4 NC_004681.1 + 43583 1.13 0.000947
Target:  5'- gAGUCGCCAUUCAGCCACGCUCAACCCa -3'
miRNA:   3'- -UCAGCGGUAAGUCGGUGCGAGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 43361 0.68 0.719729
Target:  5'- -cUCGUCGU--AGCCACGUUCAACg- -3'
miRNA:   3'- ucAGCGGUAagUCGGUGCGAGUUGgg -5'
18315 3' -54.4 NC_004681.1 + 51571 0.68 0.729164
Target:  5'- cGGUCGCCcaGUUCGaugaggcgacgcuGCCugGCUUugUCCu -3'
miRNA:   3'- -UCAGCGG--UAAGU-------------CGGugCGAGuuGGG- -5'
18315 3' -54.4 NC_004681.1 + 14647 0.66 0.845406
Target:  5'- uGGUgGCgGUggCGGCgAUGC-CGACCCc -3'
miRNA:   3'- -UCAgCGgUAa-GUCGgUGCGaGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 50489 0.74 0.402796
Target:  5'- cAGUCGCCGUagucgugguagcggUAGCCGCcCUCGACCa -3'
miRNA:   3'- -UCAGCGGUAa-------------GUCGGUGcGAGUUGGg -5'
18315 3' -54.4 NC_004681.1 + 33855 0.72 0.485449
Target:  5'- cGGaaGCUcc-CAGCCGCGCUCGGCCg -3'
miRNA:   3'- -UCagCGGuaaGUCGGUGCGAGUUGGg -5'
18315 3' -54.4 NC_004681.1 + 2080 0.72 0.516151
Target:  5'- ---gGCCAaUCAGCC-CGgaCAACCCg -3'
miRNA:   3'- ucagCGGUaAGUCGGuGCgaGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 62951 0.7 0.57964
Target:  5'- cGGUCGCgGUccuucUCGG-CGCGCUCGgugcGCCCc -3'
miRNA:   3'- -UCAGCGgUA-----AGUCgGUGCGAGU----UGGG- -5'
18315 3' -54.4 NC_004681.1 + 2634 0.69 0.666285
Target:  5'- -uUUGCCGUUCuuGCgCGCgaGCUCAAUCCa -3'
miRNA:   3'- ucAGCGGUAAGu-CG-GUG--CGAGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 9894 0.68 0.719729
Target:  5'- -cUCGUCcucgacCAGCUugGCUuCAGCCCg -3'
miRNA:   3'- ucAGCGGuaa---GUCGGugCGA-GUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 12352 0.69 0.68783
Target:  5'- gAGUCgGCCAcagCaccgGGCCACccgaCUCAGCCCa -3'
miRNA:   3'- -UCAG-CGGUaa-G----UCGGUGc---GAGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 19468 0.69 0.644616
Target:  5'- cGUCGCCca--GGCCGgugUGgUCGACCCg -3'
miRNA:   3'- uCAGCGGuaagUCGGU---GCgAGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 50654 0.76 0.300574
Target:  5'- -uUCGCCAgccacagcUUCAGCgCGCGCUCAGCaaCCg -3'
miRNA:   3'- ucAGCGGU--------AAGUCG-GUGCGAGUUG--GG- -5'
18315 3' -54.4 NC_004681.1 + 9932 0.69 0.68783
Target:  5'- -uUCGCCuugCGGCCGCuGCggaCAACCUu -3'
miRNA:   3'- ucAGCGGuaaGUCGGUG-CGa--GUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 40667 0.75 0.353169
Target:  5'- uGUCGCCGUuugccUCGGCgACGCUCGGugaguggcuccacuCCCu -3'
miRNA:   3'- uCAGCGGUA-----AGUCGgUGCGAGUU--------------GGG- -5'
18315 3' -54.4 NC_004681.1 + 52978 0.7 0.590413
Target:  5'- uGUCGCCGcggcUCGGgCACGCgggCAGgCCg -3'
miRNA:   3'- uCAGCGGUa---AGUCgGUGCGa--GUUgGG- -5'
18315 3' -54.4 NC_004681.1 + 26576 0.68 0.698529
Target:  5'- cAGUCGCCAUagUCguaccaGGCCAgGCcgUAGCCg -3'
miRNA:   3'- -UCAGCGGUA--AG------UCGGUgCGa-GUUGGg -5'
18315 3' -54.4 NC_004681.1 + 22907 0.68 0.719729
Target:  5'- gGGUCGCCc--CGGCgAUGCcguaguagCGGCCCa -3'
miRNA:   3'- -UCAGCGGuaaGUCGgUGCGa-------GUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 37672 0.74 0.399172
Target:  5'- cGUgGCCGaUCA-CCACaGCUCGACCCc -3'
miRNA:   3'- uCAgCGGUaAGUcGGUG-CGAGUUGGG- -5'
18315 3' -54.4 NC_004681.1 + 55899 0.72 0.505826
Target:  5'- -aUCGaCCGUcagCAGCCGCuCUCGACCUa -3'
miRNA:   3'- ucAGC-GGUAa--GUCGGUGcGAGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.