miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18334 5' -63.1 NC_004681.1 + 68924 0.7 0.231794
Target:  5'- gGCCGCCGCCACCGaaGacuuCGAguacgAGGAa -3'
miRNA:   3'- gCGGCGGCGGUGGUggCg---GCU-----UCCUc -5'
18334 5' -63.1 NC_004681.1 + 67176 0.67 0.352034
Target:  5'- uGuCCGUCGCauCGCCACCGa-GAAGGAa -3'
miRNA:   3'- gC-GGCGGCG--GUGGUGGCggCUUCCUc -5'
18334 5' -63.1 NC_004681.1 + 65181 0.73 0.151893
Target:  5'- aCGCCGCCaagcGCCACCuggaCGCCugguGGGAGg -3'
miRNA:   3'- -GCGGCGG----CGGUGGug--GCGGcu--UCCUC- -5'
18334 5' -63.1 NC_004681.1 + 65028 0.7 0.219202
Target:  5'- gGCgCGUCGCCACCucgugcuccaggcgGgCGCCGcGGGAGa -3'
miRNA:   3'- gCG-GCGGCGGUGG--------------UgGCGGCuUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 64237 0.66 0.439318
Target:  5'- gGCCGCUgGCaugaaauccccgaacCGCaCACCGCCG-AGGAa -3'
miRNA:   3'- gCGGCGG-CG---------------GUG-GUGGCGGCuUCCUc -5'
18334 5' -63.1 NC_004681.1 + 63741 0.71 0.195283
Target:  5'- aCGgCGCCcucgguacGCCACCACCGaCUGAAcGGGGc -3'
miRNA:   3'- -GCgGCGG--------CGGUGGUGGC-GGCUU-CCUC- -5'
18334 5' -63.1 NC_004681.1 + 63052 1.08 0.000344
Target:  5'- cCGCCGCCGCCACCACCGCCGAAGGAGa -3'
miRNA:   3'- -GCGGCGGCGGUGGUGGCGGCUUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 62423 0.7 0.25514
Target:  5'- gCGCCGacaCCGCCcucuCCGCCGCCc-AGGAa -3'
miRNA:   3'- -GCGGC---GGCGGu---GGUGGCGGcuUCCUc -5'
18334 5' -63.1 NC_004681.1 + 62268 0.66 0.400871
Target:  5'- gCGCCGgggGCaagAUCACCGCCG-AGGAGu -3'
miRNA:   3'- -GCGGCgg-CGg--UGGUGGCGGCuUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 61762 0.69 0.26752
Target:  5'- aGaCCGCgGCCGCCAUCGgCC--AGGAGc -3'
miRNA:   3'- gC-GGCGgCGGUGGUGGC-GGcuUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 61667 0.83 0.02618
Target:  5'- aGCCGCCGCCgcggagGCCGCCGCCGAGGu-- -3'
miRNA:   3'- gCGGCGGCGG------UGGUGGCGGCUUCcuc -5'
18334 5' -63.1 NC_004681.1 + 61504 0.72 0.163901
Target:  5'- aGCUGCCGCCcCCguugcuguuGCCGCCGAccuuGGAc -3'
miRNA:   3'- gCGGCGGCGGuGG---------UGGCGGCUu---CCUc -5'
18334 5' -63.1 NC_004681.1 + 60556 0.66 0.418083
Target:  5'- aCGCCGCaCGCCucggGCCGCUGgCCGAc---- -3'
miRNA:   3'- -GCGGCG-GCGG----UGGUGGC-GGCUuccuc -5'
18334 5' -63.1 NC_004681.1 + 60142 0.69 0.27389
Target:  5'- aGCCGgUGCCAggugcgggaGCCGCCGAAGGcGa -3'
miRNA:   3'- gCGGCgGCGGUgg-------UGGCGGCUUCCuC- -5'
18334 5' -63.1 NC_004681.1 + 58651 0.71 0.210274
Target:  5'- gCGCCaCgGCCGCCugCGCCGcGGGc- -3'
miRNA:   3'- -GCGGcGgCGGUGGugGCGGCuUCCuc -5'
18334 5' -63.1 NC_004681.1 + 57804 0.72 0.185816
Target:  5'- gCGCCG-CGCCGCCGaggUGgCGAAGGAGc -3'
miRNA:   3'- -GCGGCgGCGGUGGUg--GCgGCUUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 57605 0.69 0.286993
Target:  5'- cCGuCCGCCGCCuacagucCCuCCGCCGAcuGGGc -3'
miRNA:   3'- -GC-GGCGGCGGu------GGuGGCGGCUucCUC- -5'
18334 5' -63.1 NC_004681.1 + 52230 0.72 0.172374
Target:  5'- aGCUGCUugGCCGCCACCuugagGCUGcGGGAGa -3'
miRNA:   3'- gCGGCGG--CGGUGGUGG-----CGGCuUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 51822 0.69 0.27389
Target:  5'- gGCCGCCGaCgACCACCagguuccCCG-GGGAGa -3'
miRNA:   3'- gCGGCGGC-GgUGGUGGc------GGCuUCCUC- -5'
18334 5' -63.1 NC_004681.1 + 51516 0.69 0.286993
Target:  5'- -aCCGaCGCCACCACCuCCGAAG-AGg -3'
miRNA:   3'- gcGGCgGCGGUGGUGGcGGCUUCcUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.