miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18338 3' -59.3 NC_004681.1 + 30249 0.66 0.616157
Target:  5'- cGCGGCCGcgccgCCUgagccCGaCCCaCAGGCCGccuUGUa -3'
miRNA:   3'- -CGCCGGUa----GGA-----GC-GGG-GUCUGGU---ACG- -5'
18338 3' -59.3 NC_004681.1 + 6707 0.66 0.616157
Target:  5'- cGCGaaGCCcuugauGUCCUUGCCgCGGcCCAUGg -3'
miRNA:   3'- -CGC--CGG------UAGGAGCGGgGUCuGGUACg -5'
18338 3' -59.3 NC_004681.1 + 62365 0.66 0.609885
Target:  5'- gGCGGUgAUCUU-GCCCCcggcgcgguggacgaAGACCuugGCg -3'
miRNA:   3'- -CGCCGgUAGGAgCGGGG---------------UCUGGua-CG- -5'
18338 3' -59.3 NC_004681.1 + 30048 0.66 0.605707
Target:  5'- cGCGGCCAUCg--GCCUCGGAgCucccGCu -3'
miRNA:   3'- -CGCCGGUAGgagCGGGGUCUgGua--CG- -5'
18338 3' -59.3 NC_004681.1 + 67995 0.66 0.601532
Target:  5'- -gGGCCAUCCgcaaggaagagaaCGCCuUCGGGCCucccgGCa -3'
miRNA:   3'- cgCCGGUAGGa------------GCGG-GGUCUGGua---CG- -5'
18338 3' -59.3 NC_004681.1 + 17494 0.66 0.596319
Target:  5'- gGCGGCCGUCCaugauguugacgagGUCCUcGACCGcGCu -3'
miRNA:   3'- -CGCCGGUAGGag------------CGGGGuCUGGUaCG- -5'
18338 3' -59.3 NC_004681.1 + 60288 0.66 0.595277
Target:  5'- cGCGGCgGgugccgaucaCCUCGCgCUCAGcACCA-GCa -3'
miRNA:   3'- -CGCCGgUa---------GGAGCG-GGGUC-UGGUaCG- -5'
18338 3' -59.3 NC_004681.1 + 14523 0.66 0.595277
Target:  5'- gGCGGCguagAUUUUCGCCUCGG-CCGccUGCu -3'
miRNA:   3'- -CGCCGg---UAGGAGCGGGGUCuGGU--ACG- -5'
18338 3' -59.3 NC_004681.1 + 46605 0.66 0.595277
Target:  5'- cCGGCCca-CUCGCCgaGGACCccGCc -3'
miRNA:   3'- cGCCGGuagGAGCGGggUCUGGuaCG- -5'
18338 3' -59.3 NC_004681.1 + 25779 0.66 0.594235
Target:  5'- -aGGCCGacgCCUgGCCCCGccccuguGGCCAUa- -3'
miRNA:   3'- cgCCGGUa--GGAgCGGGGU-------CUGGUAcg -5'
18338 3' -59.3 NC_004681.1 + 7775 0.66 0.592153
Target:  5'- -aGGCCcgCCUCGaaggacugcucaacCCCCAGACUc--- -3'
miRNA:   3'- cgCCGGuaGGAGC--------------GGGGUCUGGuacg -5'
18338 3' -59.3 NC_004681.1 + 69133 0.66 0.584875
Target:  5'- cUGGCCucCCUCGCCUaccGGCUcgGCu -3'
miRNA:   3'- cGCCGGuaGGAGCGGGgu-CUGGuaCG- -5'
18338 3' -59.3 NC_004681.1 + 40714 0.66 0.583837
Target:  5'- gGCGGCCA-CCaucaacgUCGCCCUucaAGGCUuaGCu -3'
miRNA:   3'- -CGCCGGUaGG-------AGCGGGG---UCUGGuaCG- -5'
18338 3' -59.3 NC_004681.1 + 37065 0.66 0.574509
Target:  5'- gGUGGCuCAUCCcagCgGCCUCAGaACCA-GCc -3'
miRNA:   3'- -CGCCG-GUAGGa--G-CGGGGUC-UGGUaCG- -5'
18338 3' -59.3 NC_004681.1 + 55106 0.66 0.564186
Target:  5'- cGUGGUUAUCaCUCGCCaCuCAGACUuaAUGa -3'
miRNA:   3'- -CGCCGGUAG-GAGCGG-G-GUCUGG--UACg -5'
18338 3' -59.3 NC_004681.1 + 53818 0.66 0.564186
Target:  5'- --cGCCAUCCUgcucgccauUGCCUUcuucauggaGGGCCAUGCg -3'
miRNA:   3'- cgcCGGUAGGA---------GCGGGG---------UCUGGUACG- -5'
18338 3' -59.3 NC_004681.1 + 30869 0.66 0.564186
Target:  5'- cGCGGCCGUuggugaccaggcCCUUggaGCCCgCGGACUcgaugagcAUGCc -3'
miRNA:   3'- -CGCCGGUA------------GGAG---CGGG-GUCUGG--------UACG- -5'
18338 3' -59.3 NC_004681.1 + 12173 0.66 0.564186
Target:  5'- uCGGCCAcguaCUCGgCCUcGuCCAUGCg -3'
miRNA:   3'- cGCCGGUag--GAGCgGGGuCuGGUACG- -5'
18338 3' -59.3 NC_004681.1 + 10102 0.67 0.553913
Target:  5'- gGCGacGUCGUCCUCGa-CCAGAUCGaacuUGCg -3'
miRNA:   3'- -CGC--CGGUAGGAGCggGGUCUGGU----ACG- -5'
18338 3' -59.3 NC_004681.1 + 5887 0.67 0.552888
Target:  5'- gGCGGCCAgcguucuUCCacaUCGCCgCGGugGCguUGCg -3'
miRNA:   3'- -CGCCGGU-------AGG---AGCGGgGUC--UGguACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.