miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18345 5' -58.9 NC_004681.1 + 69608 0.69 0.454795
Target:  5'- aGuGAGCacaCGGCGUGGCGCaccucgcgcaCCAGGa -3'
miRNA:   3'- cCuCUUGgugGCCGUACCGCG----------GGUCC- -5'
18345 5' -58.9 NC_004681.1 + 68627 1.11 0.000551
Target:  5'- gGGAGAACCACCGGCAUGGCGCCCAGGc -3'
miRNA:   3'- -CCUCUUGGUGGCCGUACCGCGGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 64756 0.7 0.383366
Target:  5'- uGGcGGGAUCGuCCGGUAUGGCGaUCUGGGu -3'
miRNA:   3'- -CC-UCUUGGU-GGCCGUACCGC-GGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 62567 0.67 0.583966
Target:  5'- aGGAGAuggaaCGCCGGgAgcGCGCCgAGGc -3'
miRNA:   3'- -CCUCUug---GUGGCCgUacCGCGGgUCC- -5'
18345 5' -58.9 NC_004681.1 + 62518 0.69 0.454795
Target:  5'- cGGAGAG--GgCGGUGUcGGCGCCCAGc -3'
miRNA:   3'- -CCUCUUggUgGCCGUA-CCGCGGGUCc -5'
18345 5' -58.9 NC_004681.1 + 60127 0.73 0.257482
Target:  5'- cGGGAGCCGCCGaaggcgaGCA-GGUGCCCAccGGg -3'
miRNA:   3'- cCUCUUGGUGGC-------CGUaCCGCGGGU--CC- -5'
18345 5' -58.9 NC_004681.1 + 56139 0.67 0.552101
Target:  5'- uGGAGAACCACCGccGCAUcaaGGCGaugaagcUCCGcGGc -3'
miRNA:   3'- -CCUCUUGGUGGC--CGUA---CCGC-------GGGU-CC- -5'
18345 5' -58.9 NC_004681.1 + 55555 0.68 0.512809
Target:  5'- -cGGAAUCACCGGC-UGGgGCCUu-- -3'
miRNA:   3'- ccUCUUGGUGGCCGuACCgCGGGucc -5'
18345 5' -58.9 NC_004681.1 + 54671 0.66 0.656835
Target:  5'- cGGGGGGCaGCUGGCugAUGGUuCCCAccGGg -3'
miRNA:   3'- -CCUCUUGgUGGCCG--UACCGcGGGU--CC- -5'
18345 5' -58.9 NC_004681.1 + 52341 0.68 0.522782
Target:  5'- aGAGAgucGCCACCGGCcagguUGGUcagGUCgGGGa -3'
miRNA:   3'- cCUCU---UGGUGGCCGu----ACCG---CGGgUCC- -5'
18345 5' -58.9 NC_004681.1 + 51585 0.66 0.646419
Target:  5'- --cGAGCUGgCGGCAgcGGuCGCCCAGu -3'
miRNA:   3'- ccuCUUGGUgGCCGUa-CC-GCGGGUCc -5'
18345 5' -58.9 NC_004681.1 + 51583 0.72 0.298073
Target:  5'- uGGAGcAAcCCACCGGCAacgGGCucggcuucGCCCAGc -3'
miRNA:   3'- -CCUC-UU-GGUGGCCGUa--CCG--------CGGGUCc -5'
18345 5' -58.9 NC_004681.1 + 51285 0.67 0.573639
Target:  5'- uGGAGAGaa----GCAUGGCGCCgAGGa -3'
miRNA:   3'- -CCUCUUgguggcCGUACCGCGGgUCC- -5'
18345 5' -58.9 NC_004681.1 + 44486 0.68 0.532829
Target:  5'- aGGAGggUgAguugcCCGGacgGGCGCCCguAGGg -3'
miRNA:   3'- -CCUCuuGgU-----GGCCguaCCGCGGG--UCC- -5'
18345 5' -58.9 NC_004681.1 + 42504 0.67 0.542944
Target:  5'- cGAGcccGACCGCUGGCAggaauGCGCCCccGGc -3'
miRNA:   3'- cCUC---UUGGUGGCCGUac---CGCGGGu-CC- -5'
18345 5' -58.9 NC_004681.1 + 41167 0.7 0.400519
Target:  5'- cGGuGAGCaCAUCGGCGgcGGCGCCgaagAGGg -3'
miRNA:   3'- -CCuCUUG-GUGGCCGUa-CCGCGGg---UCC- -5'
18345 5' -58.9 NC_004681.1 + 40116 0.68 0.502915
Target:  5'- cGGGggUCGCCaGGUcgGugacCGCCCGGGa -3'
miRNA:   3'- cCUCuuGGUGG-CCGuaCc---GCGGGUCC- -5'
18345 5' -58.9 NC_004681.1 + 39361 0.66 0.656835
Target:  5'- gGGAGuACUugACgCGGCGgcccuUGGCGCCCu-- -3'
miRNA:   3'- -CCUCuUGG--UG-GCCGU-----ACCGCGGGucc -5'
18345 5' -58.9 NC_004681.1 + 38345 0.67 0.594329
Target:  5'- cGGAGggUCcugACaCGGUgccuAUGGCGCCgccgCGGGa -3'
miRNA:   3'- -CCUCuuGG---UG-GCCG----UACCGCGG----GUCC- -5'
18345 5' -58.9 NC_004681.1 + 37772 0.68 0.522782
Target:  5'- uGGAGAagcgacgcgcgGCCGCUGGCGaGGC-CCCGc- -3'
miRNA:   3'- -CCUCU-----------UGGUGGCCGUaCCGcGGGUcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.