miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18376 5' -51.9 NC_004681.1 + 42241 0.66 0.943136
Target:  5'- aCGGCCgCCgagCugcuggucccgccCGCGGAAGGCg -3'
miRNA:   3'- aGCCGGgGGa--Guaaau--------GUGCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 529 0.66 0.941661
Target:  5'- gCGGCCgcgaguCCCUCA-----ACGAcGGGCa -3'
miRNA:   3'- aGCCGG------GGGAGUaaaugUGCUuUCCG- -5'
18376 5' -51.9 NC_004681.1 + 46605 0.66 0.941661
Target:  5'- -aGG-CCCCUCGgauuu-CGAGGGGCc -3'
miRNA:   3'- agCCgGGGGAGUaaauguGCUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 62553 0.66 0.938124
Target:  5'- -gGGCgCCCUCGgacucgauggccuggACGCGGAAuucGGCg -3'
miRNA:   3'- agCCGgGGGAGUaaa------------UGUGCUUU---CCG- -5'
18376 5' -51.9 NC_004681.1 + 63741 0.66 0.936567
Target:  5'- aCGGCgCCCUCgg-UACGCcaccaccgacuGAAcgGGGCu -3'
miRNA:   3'- aGCCGgGGGAGuaaAUGUG-----------CUU--UCCG- -5'
18376 5' -51.9 NC_004681.1 + 18491 0.66 0.936567
Target:  5'- -gGGCUCCC-CGcggUACGCGAGcuugcGGCg -3'
miRNA:   3'- agCCGGGGGaGUaa-AUGUGCUUu----CCG- -5'
18376 5' -51.9 NC_004681.1 + 75750 0.66 0.931198
Target:  5'- aUCGGaguuCCCCUCGgugcauagAUAUGcAGGGCa -3'
miRNA:   3'- -AGCCg---GGGGAGUaaa-----UGUGCuUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 12292 0.66 0.931198
Target:  5'- gUGGCaaCCCUCG---GCACGGauGAGGUg -3'
miRNA:   3'- aGCCGg-GGGAGUaaaUGUGCU--UUCCG- -5'
18376 5' -51.9 NC_004681.1 + 25873 0.66 0.931198
Target:  5'- gCGGCCCuUCUCGggUcCGCGcuuGGCg -3'
miRNA:   3'- aGCCGGG-GGAGUaaAuGUGCuuuCCG- -5'
18376 5' -51.9 NC_004681.1 + 40631 0.66 0.928411
Target:  5'- gUGGCCgCCCUCucccagcuacuccgcCACGuAAGGCg -3'
miRNA:   3'- aGCCGG-GGGAGuaaau----------GUGCuUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 45370 0.66 0.925554
Target:  5'- gUCGGUgCCCUgGUggacguucgUGgGCGAGAGcGCc -3'
miRNA:   3'- -AGCCGgGGGAgUAa--------AUgUGCUUUC-CG- -5'
18376 5' -51.9 NC_004681.1 + 18918 0.66 0.925554
Target:  5'- cCGGUCCCCaggCucccguCGCGGGAGcGCa -3'
miRNA:   3'- aGCCGGGGGa--Guaaau-GUGCUUUC-CG- -5'
18376 5' -51.9 NC_004681.1 + 29980 0.66 0.925554
Target:  5'- gUCGGCCcaaCCCcCA---ACACaGGAGGCa -3'
miRNA:   3'- -AGCCGG---GGGaGUaaaUGUGcUUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 28572 0.66 0.919633
Target:  5'- cCGGCCUUCaUCGUUgcgauguagGCGCGGAuGGUc -3'
miRNA:   3'- aGCCGGGGG-AGUAAa--------UGUGCUUuCCG- -5'
18376 5' -51.9 NC_004681.1 + 35731 0.66 0.919633
Target:  5'- -aGGUCCUCUCGUgu-CAgGGAuucgGGGCu -3'
miRNA:   3'- agCCGGGGGAGUAaauGUgCUU----UCCG- -5'
18376 5' -51.9 NC_004681.1 + 67938 0.67 0.912802
Target:  5'- gCGGCUUCCUCGgagGCGgcggcggucucauCGAcGGGCg -3'
miRNA:   3'- aGCCGGGGGAGUaaaUGU-------------GCUuUCCG- -5'
18376 5' -51.9 NC_004681.1 + 17931 0.67 0.900224
Target:  5'- gCGGUCCCCgCAggugagUGC-CG-AGGGCg -3'
miRNA:   3'- aGCCGGGGGaGUaa----AUGuGCuUUCCG- -5'
18376 5' -51.9 NC_004681.1 + 64918 0.67 0.89178
Target:  5'- gCGGCgCCCgccuggaGCACGAGGuGGCg -3'
miRNA:   3'- aGCCGgGGGaguaaa-UGUGCUUU-CCG- -5'
18376 5' -51.9 NC_004681.1 + 55285 0.68 0.878405
Target:  5'- aCGGCCUCUUCGggUACG-GAcaccaggacAAGGCu -3'
miRNA:   3'- aGCCGGGGGAGUaaAUGUgCU---------UUCCG- -5'
18376 5' -51.9 NC_004681.1 + 17246 0.68 0.878405
Target:  5'- aCGGCUaccucccguaCCUCAacUACGCGGgcGGCg -3'
miRNA:   3'- aGCCGGg---------GGAGUaaAUGUGCUuuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.