miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18416 3' -54.3 NC_004681.1 + 995 0.66 0.849786
Target:  5'- aCACCGauugggGGAGCUCCaugaagacgcacaugACCgcugacaaauacguCGCGGACg -3'
miRNA:   3'- aGUGGU------UCUCGAGG---------------UGGau------------GUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 29806 0.66 0.845537
Target:  5'- aCACCAggcgcgGGAGCUCgGCauccaACGCGGcGCg -3'
miRNA:   3'- aGUGGU------UCUCGAGgUGga---UGUGCC-UG- -5'
18416 3' -54.3 NC_004681.1 + 68707 0.66 0.845537
Target:  5'- uUCACUuGGccuGCUCCGcuCCUACGaGGACu -3'
miRNA:   3'- -AGUGGuUCu--CGAGGU--GGAUGUgCCUG- -5'
18416 3' -54.3 NC_004681.1 + 51336 0.66 0.845537
Target:  5'- gUCGCCGcGGAGCUCgGCaaGCAagGGAUg -3'
miRNA:   3'- -AGUGGU-UCUCGAGgUGgaUGUg-CCUG- -5'
18416 3' -54.3 NC_004681.1 + 13530 0.66 0.845537
Target:  5'- cCGCCGuGGuucGCUCCGCCaucgccauCAUGGGCg -3'
miRNA:   3'- aGUGGUuCU---CGAGGUGGau------GUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 22790 0.66 0.842962
Target:  5'- aCACCAGGGGgcgccaCUCCuugggcuggucgguGCCggggAUGCGGACg -3'
miRNA:   3'- aGUGGUUCUC------GAGG--------------UGGa---UGUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 16971 0.66 0.836876
Target:  5'- cCACCAGgcuGAGCUgCGCCUcaacgaggcccGCAaGGACc -3'
miRNA:   3'- aGUGGUU---CUCGAgGUGGA-----------UGUgCCUG- -5'
18416 3' -54.3 NC_004681.1 + 8990 0.66 0.835998
Target:  5'- -aGCCAGGAGCUggACCUcuuccuuGCGCuGGAUg -3'
miRNA:   3'- agUGGUUCUCGAggUGGA-------UGUG-CCUG- -5'
18416 3' -54.3 NC_004681.1 + 15724 0.66 0.828003
Target:  5'- gUCuuCC-AGAGCUCCAUCgucuuCGCGGuCg -3'
miRNA:   3'- -AGu-GGuUCUCGAGGUGGau---GUGCCuG- -5'
18416 3' -54.3 NC_004681.1 + 46470 0.66 0.828003
Target:  5'- gUCAUCGAugcGGGUccggUCCACCUccagACugGGGCc -3'
miRNA:   3'- -AGUGGUU---CUCG----AGGUGGA----UGugCCUG- -5'
18416 3' -54.3 NC_004681.1 + 17679 0.66 0.828003
Target:  5'- cUCACCGGcAGCUCCcgaCUACGCcucGACg -3'
miRNA:   3'- -AGUGGUUcUCGAGGug-GAUGUGc--CUG- -5'
18416 3' -54.3 NC_004681.1 + 25714 0.66 0.828003
Target:  5'- aUCGCCGcAGGGCUaCUACCUGaagaccUACGG-Ca -3'
miRNA:   3'- -AGUGGU-UCUCGA-GGUGGAU------GUGCCuG- -5'
18416 3' -54.3 NC_004681.1 + 24158 0.66 0.828003
Target:  5'- cCGCCAAGGGCcuguucUCCugggACCUACuCGG-Cg -3'
miRNA:   3'- aGUGGUUCUCG------AGG----UGGAUGuGCCuG- -5'
18416 3' -54.3 NC_004681.1 + 61832 0.66 0.828003
Target:  5'- gCGCgCGAGGGCggCCuCCU-UGCGGACg -3'
miRNA:   3'- aGUG-GUUCUCGa-GGuGGAuGUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 63975 0.66 0.818929
Target:  5'- -aGCCAGGAGUcuuUCCAauugacCACGGGCg -3'
miRNA:   3'- agUGGUUCUCG---AGGUggau--GUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 16167 0.66 0.818929
Target:  5'- cCACCGAGGGCggcagUCUGCgUUGCgGCGGAUg -3'
miRNA:   3'- aGUGGUUCUCG-----AGGUG-GAUG-UGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 62886 0.66 0.809661
Target:  5'- -gGCCuggAAGAGCUCCGCaccaagAUugGGAg -3'
miRNA:   3'- agUGG---UUCUCGAGGUGga----UGugCCUg -5'
18416 3' -54.3 NC_004681.1 + 45529 0.66 0.809661
Target:  5'- aCACCGAGGGCggCCAUggAgGCGG-Cg -3'
miRNA:   3'- aGUGGUUCUCGa-GGUGgaUgUGCCuG- -5'
18416 3' -54.3 NC_004681.1 + 23661 0.66 0.806845
Target:  5'- -aGCCcaucGAGCUggccuccuacgcgcCCGCCUcCGCGGACa -3'
miRNA:   3'- agUGGuu--CUCGA--------------GGUGGAuGUGCCUG- -5'
18416 3' -54.3 NC_004681.1 + 20434 0.67 0.800211
Target:  5'- cCAuCCAGGAGCUCguacagguUGCCUuGCGgGGGCa -3'
miRNA:   3'- aGU-GGUUCUCGAG--------GUGGA-UGUgCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.