miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18431 5' -60.8 NC_004681.1 + 67430 0.68 0.442281
Target:  5'- aCCagGCCCugcgacacgGCCAGGUCGaggaGUUCGACCu -3'
miRNA:   3'- gGGaaCGGG---------CGGUCCAGC----CGGGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 66957 0.71 0.283659
Target:  5'- cUCCagggcUGCUCGCCAGuGUcCGGCUgAACCa -3'
miRNA:   3'- -GGGa----ACGGGCGGUC-CA-GCCGGgUUGG- -5'
18431 5' -60.8 NC_004681.1 + 65074 0.74 0.182552
Target:  5'- cCCCgcucgggUGgUCGCCgAGGUCGGCCUGGCa -3'
miRNA:   3'- -GGGa------ACgGGCGG-UCCAGCCGGGUUGg -5'
18431 5' -60.8 NC_004681.1 + 63432 0.68 0.43322
Target:  5'- uCCCUgGCCa-CCAGGcuuccagccUCGGCCgGAUCa -3'
miRNA:   3'- -GGGAaCGGgcGGUCC---------AGCCGGgUUGG- -5'
18431 5' -60.8 NC_004681.1 + 62742 0.67 0.498762
Target:  5'- aUCCUgugUGCUCuCCuuGGGUCGGUUCAGCUu -3'
miRNA:   3'- -GGGA---ACGGGcGG--UCCAGCCGGGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 60626 0.66 0.527196
Target:  5'- aCCCUucgGCCCGUCucGGUCGggaagaugugaccGCCauuGCCg -3'
miRNA:   3'- -GGGAa--CGGGCGGu-CCAGC-------------CGGgu-UGG- -5'
18431 5' -60.8 NC_004681.1 + 57768 0.66 0.538141
Target:  5'- gUCgaGCgCUGCgCGGGUCaGUCCAACCc -3'
miRNA:   3'- gGGaaCG-GGCG-GUCCAGcCGGGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 56332 0.67 0.498762
Target:  5'- gCCCUcuugcaGCUCGCuCGGGUCgacgccGGUCCAgGCCa -3'
miRNA:   3'- -GGGAa-----CGGGCG-GUCCAG------CCGGGU-UGG- -5'
18431 5' -60.8 NC_004681.1 + 53346 0.68 0.442281
Target:  5'- aCCCUUGgCCGCCuGGUgcaGGUgCCAcucgacACCu -3'
miRNA:   3'- -GGGAACgGGCGGuCCAg--CCG-GGU------UGG- -5'
18431 5' -60.8 NC_004681.1 + 52867 0.7 0.311416
Target:  5'- aCCgaggugcUGUCCGCCAGGUCGa-CCAugCa -3'
miRNA:   3'- gGGa------ACGGGCGGUCCAGCcgGGUugG- -5'
18431 5' -60.8 NC_004681.1 + 51960 0.67 0.460719
Target:  5'- aCCaggUGCCUGCCgcgaGGaGUCGGCUgAACa -3'
miRNA:   3'- -GGga-ACGGGCGG----UC-CAGCCGGgUUGg -5'
18431 5' -60.8 NC_004681.1 + 51842 0.78 0.092769
Target:  5'- aCUCUUGCCCgcGCCGGGgCGGCCgccgaCGACCa -3'
miRNA:   3'- -GGGAACGGG--CGGUCCaGCCGG-----GUUGG- -5'
18431 5' -60.8 NC_004681.1 + 51438 0.66 0.544144
Target:  5'- uCCCUUGCuuGCCGagcuccgcGGcgacggugaugacgUCGGCggacucaCCGGCCa -3'
miRNA:   3'- -GGGAACGggCGGU--------CC--------------AGCCG-------GGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 49648 0.66 0.518303
Target:  5'- gCC-UGCCCGCgGGGgaaGGCCagGGCg -3'
miRNA:   3'- gGGaACGGGCGgUCCag-CCGGg-UUGg -5'
18431 5' -60.8 NC_004681.1 + 49484 0.69 0.389595
Target:  5'- gCCCUacUGCCCagucGCCgGGGUCcuGCgCAACCa -3'
miRNA:   3'- -GGGA--ACGGG----CGG-UCCAGc-CGgGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 48133 0.66 0.508493
Target:  5'- aUCCagaGCCC-CCAGGcggggGGCUCAACCa -3'
miRNA:   3'- -GGGaa-CGGGcGGUCCag---CCGGGUUGG- -5'
18431 5' -60.8 NC_004681.1 + 45479 0.66 0.548158
Target:  5'- gCCCUUGaggugcuccCCCGCCuuggAGGUgcgggaguaUGGCUCGACg -3'
miRNA:   3'- -GGGAAC---------GGGCGG----UCCA---------GCCGGGUUGg -5'
18431 5' -60.8 NC_004681.1 + 45064 0.66 0.548158
Target:  5'- gCCgaaGCauCCGCCGcGGUCgaGGCCCucGCCg -3'
miRNA:   3'- gGGaa-CG--GGCGGU-CCAG--CCGGGu-UGG- -5'
18431 5' -60.8 NC_004681.1 + 45043 0.67 0.498762
Target:  5'- gCCCgaGCUCGCgGuGG-CGGCUCcACCg -3'
miRNA:   3'- -GGGaaCGGGCGgU-CCaGCCGGGuUGG- -5'
18431 5' -60.8 NC_004681.1 + 44893 0.69 0.389595
Target:  5'- gUCUUGCCCaccuCCAGGgCGGUCCAGa- -3'
miRNA:   3'- gGGAACGGGc---GGUCCaGCCGGGUUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.