miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18452 5' -53.5 NC_004681.1 + 72967 0.66 0.876673
Target:  5'- uCCAccCGGauCAAGUugCcGCGCGCGUGg -3'
miRNA:   3'- uGGUa-GCU--GUUUAugGaCGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 72343 0.72 0.544473
Target:  5'- cGCCAUCGugGAGUccaucaACC-GC-CGCGCGg -3'
miRNA:   3'- -UGGUAGCugUUUA------UGGaCGcGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 70458 0.68 0.748822
Target:  5'- cGCCAUgGugGu---CCUGCGgcCGCGCGu -3'
miRNA:   3'- -UGGUAgCugUuuauGGACGC--GCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 70402 0.66 0.860871
Target:  5'- cGCUuUCGGau--UGCCacgcGCGCGCGCGa -3'
miRNA:   3'- -UGGuAGCUguuuAUGGa---CGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 70211 0.68 0.779131
Target:  5'- aGCCAaUGAgGAAcgcaugGCCcgUGUGCGCGCGg -3'
miRNA:   3'- -UGGUaGCUgUUUa-----UGG--ACGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 69230 0.7 0.685357
Target:  5'- aGCCGguaGGCGAGggagGCCaggGCGCGgGCGa -3'
miRNA:   3'- -UGGUag-CUGUUUa---UGGa--CGCGCgCGC- -5'
18452 5' -53.5 NC_004681.1 + 66975 0.66 0.884205
Target:  5'- cAUCGggGACAGucacgucgGCCUGCaCGCGCGc -3'
miRNA:   3'- -UGGUagCUGUUua------UGGACGcGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 64833 0.72 0.555131
Target:  5'- cCCGUgGGacuGGUACCUGCGC-CGCGa -3'
miRNA:   3'- uGGUAgCUgu-UUAUGGACGCGcGCGC- -5'
18452 5' -53.5 NC_004681.1 + 62345 0.71 0.575542
Target:  5'- cGCgGUgGACGAAgACCuuggcgaUGCGCGCGCa -3'
miRNA:   3'- -UGgUAgCUGUUUaUGG-------ACGCGCGCGc -5'
18452 5' -53.5 NC_004681.1 + 62212 0.67 0.808095
Target:  5'- cAUgGUgGGCuGGUaccgccACCUGUGCGCGCGc -3'
miRNA:   3'- -UGgUAgCUGuUUA------UGGACGCGCGCGC- -5'
18452 5' -53.5 NC_004681.1 + 61772 0.68 0.798608
Target:  5'- gACC-UCGGCGGcgGCCUcCGCG-GCGg -3'
miRNA:   3'- -UGGuAGCUGUUuaUGGAcGCGCgCGC- -5'
18452 5' -53.5 NC_004681.1 + 61643 0.66 0.876673
Target:  5'- gACCAUCGcCAAG---CUGCGCGCa-- -3'
miRNA:   3'- -UGGUAGCuGUUUaugGACGCGCGcgc -5'
18452 5' -53.5 NC_004681.1 + 61267 0.74 0.462153
Target:  5'- cGCCGUCGACccaguUGcCCUGgGCGuCGCGg -3'
miRNA:   3'- -UGGUAGCUGuuu--AU-GGACgCGC-GCGC- -5'
18452 5' -53.5 NC_004681.1 + 60161 0.72 0.544473
Target:  5'- gGCCAUUGACAAGgcUGCUgGUGCugaGCGCGa -3'
miRNA:   3'- -UGGUAGCUGUUU--AUGGaCGCG---CGCGC- -5'
18452 5' -53.5 NC_004681.1 + 58769 0.7 0.663685
Target:  5'- cGCCAUCaGGCAGGUgugGCCcGCG-GCGCa -3'
miRNA:   3'- -UGGUAG-CUGUUUA---UGGaCGCgCGCGc -5'
18452 5' -53.5 NC_004681.1 + 58652 0.7 0.6528
Target:  5'- cGCCA-CGGCc---GCCUGCGC-CGCGg -3'
miRNA:   3'- -UGGUaGCUGuuuaUGGACGCGcGCGC- -5'
18452 5' -53.5 NC_004681.1 + 54338 0.66 0.884205
Target:  5'- cACCugUGGCcuAAGUACCUGCGCaaGUGg -3'
miRNA:   3'- -UGGuaGCUG--UUUAUGGACGCGcgCGC- -5'
18452 5' -53.5 NC_004681.1 + 52866 0.7 0.641897
Target:  5'- gGCCAUCGGCc--UGCCcGCGUGCcCGa -3'
miRNA:   3'- -UGGUAGCUGuuuAUGGaCGCGCGcGC- -5'
18452 5' -53.5 NC_004681.1 + 51735 0.69 0.706829
Target:  5'- gUCGUCGGCGGccGCCccgGCGCGgGCa -3'
miRNA:   3'- uGGUAGCUGUUuaUGGa--CGCGCgCGc -5'
18452 5' -53.5 NC_004681.1 + 50523 0.67 0.835427
Target:  5'- gACCGagGGCAcggagaucgcGGUugCUGaGCGCGCGc -3'
miRNA:   3'- -UGGUagCUGU----------UUAugGACgCGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.