miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18474 5' -65.4 NC_004681.1 + 74522 0.71 0.141594
Target:  5'- aCGUGGCugGACCGCCCCGGaaggugACuUCCGAg -3'
miRNA:   3'- -GCGCCG--UUGGCGGGGCCg-----UG-GGGCUa -5'
18474 5' -65.4 NC_004681.1 + 69103 0.67 0.274338
Target:  5'- uGUGGUGugaagcGCCGCCUCGcccGCGCCCUGGc -3'
miRNA:   3'- gCGCCGU------UGGCGGGGC---CGUGGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 69008 0.68 0.220974
Target:  5'- gGCGGCGGCCGUgaCGauggucaGCGCCUCGAUg -3'
miRNA:   3'- gCGCCGUUGGCGggGC-------CGUGGGGCUA- -5'
18474 5' -65.4 NC_004681.1 + 68941 0.67 0.280793
Target:  5'- uGCGGUAGCCaGCgagaggguccuCCCGGUAgguacuCCCCGGg -3'
miRNA:   3'- gCGCCGUUGG-CG-----------GGGCCGU------GGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 68516 0.71 0.152785
Target:  5'- uCGCGGCA--CGCCUgGGCGCCaugCCGGUg -3'
miRNA:   3'- -GCGCCGUugGCGGGgCCGUGG---GGCUA- -5'
18474 5' -65.4 NC_004681.1 + 66071 0.66 0.322062
Target:  5'- gCGCGGCAGCCuUCUCGGC-CUUCGu- -3'
miRNA:   3'- -GCGCCGUUGGcGGGGCCGuGGGGCua -5'
18474 5' -65.4 NC_004681.1 + 64808 0.68 0.216207
Target:  5'- aGCuGCAucCCGCCUCcgagGGCACCCCGu- -3'
miRNA:   3'- gCGcCGUu-GGCGGGG----CCGUGGGGCua -5'
18474 5' -65.4 NC_004681.1 + 62080 0.67 0.267375
Target:  5'- gCGCGGCAugGCgGCCUccaugggCGGCAUCCUGc- -3'
miRNA:   3'- -GCGCCGU--UGgCGGG-------GCCGUGGGGCua -5'
18474 5' -65.4 NC_004681.1 + 60272 0.66 0.30782
Target:  5'- aCGCcuGGUcACUGCCCCGGCGa-CUGAUg -3'
miRNA:   3'- -GCG--CCGuUGGCGGGGCCGUggGGCUA- -5'
18474 5' -65.4 NC_004681.1 + 60042 0.72 0.1246
Target:  5'- gGCGGCucCCGCaCCUGGCACCggCUGAc -3'
miRNA:   3'- gCGCCGuuGGCG-GGGCCGUGG--GGCUa -5'
18474 5' -65.4 NC_004681.1 + 58430 0.69 0.205928
Target:  5'- cCGCGGCcgaCGCCaagaCCGGCGCCCaCGu- -3'
miRNA:   3'- -GCGCCGuugGCGG----GGCCGUGGG-GCua -5'
18474 5' -65.4 NC_004681.1 + 57299 0.69 0.200948
Target:  5'- gGCGGCGAuCCGCCCCcuaguuaagccGCACUCuCGGUg -3'
miRNA:   3'- gCGCCGUU-GGCGGGGc----------CGUGGG-GCUA- -5'
18474 5' -65.4 NC_004681.1 + 57020 0.66 0.300882
Target:  5'- cCGCGGUAGCCGCUcucauugaCCGGCcaauCUCCu-- -3'
miRNA:   3'- -GCGCCGUUGGCGG--------GGCCGu---GGGGcua -5'
18474 5' -65.4 NC_004681.1 + 56914 0.67 0.280793
Target:  5'- gGUGGU-GCCGaCCCCGaGUACCCCu-- -3'
miRNA:   3'- gCGCCGuUGGC-GGGGC-CGUGGGGcua -5'
18474 5' -65.4 NC_004681.1 + 56074 0.79 0.038932
Target:  5'- gGCcuGGCAGCCGagcaCCGGCACCCCGAc -3'
miRNA:   3'- gCG--CCGUUGGCgg--GGCCGUGGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 51829 0.68 0.216207
Target:  5'- cCGgGGCGGCCGCCgacgaccaCCaGGUuCCCCGGg -3'
miRNA:   3'- -GCgCCGUUGGCGG--------GG-CCGuGGGGCUa -5'
18474 5' -65.4 NC_004681.1 + 51736 0.77 0.04945
Target:  5'- uCGuCGGCGGCCGCCCCGGCgcgggcaagaguaACgCCGGUc -3'
miRNA:   3'- -GC-GCCGUUGGCGGGGCCG-------------UGgGGCUA- -5'
18474 5' -65.4 NC_004681.1 + 49743 0.66 0.31488
Target:  5'- uCGuUGGC--CCGCuCCCGGCACUCCu-- -3'
miRNA:   3'- -GC-GCCGuuGGCG-GGGCCGUGGGGcua -5'
18474 5' -65.4 NC_004681.1 + 49443 0.68 0.22151
Target:  5'- aGUGGUcAgCGCCCgCGGCGCCgCCGu- -3'
miRNA:   3'- gCGCCGuUgGCGGG-GCCGUGG-GGCua -5'
18474 5' -65.4 NC_004681.1 + 46840 1.05 0.000315
Target:  5'- cCGCGGCAACCGCCCCGGCACCCCGAUg -3'
miRNA:   3'- -GCGCCGUUGGCGGGGCCGUGGGGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.