miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18521 3' -53.8 NC_004681.1 + 43296 0.65 0.860643
Target:  5'- gCuuCUUCGCGCUGUuguuuugucugaGCGUGUGGCa -3'
miRNA:   3'- aGuuGGAGCGCGACAua----------CGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 52216 0.66 0.855677
Target:  5'- --cACCUUGagGCUGcgggagAUGUGCGCAAUg -3'
miRNA:   3'- aguUGGAGCg-CGACa-----UACGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 62333 0.66 0.847213
Target:  5'- -aGACCUUG-GCg--AUGCGCGCGcACa -3'
miRNA:   3'- agUUGGAGCgCGacaUACGCGCGU-UG- -5'
18521 3' -53.8 NC_004681.1 + 39945 0.66 0.847213
Target:  5'- -gAACUUgGCGCgcgcgGgcgcgGUGCGCGCGguGCg -3'
miRNA:   3'- agUUGGAgCGCGa----Ca----UACGCGCGU--UG- -5'
18521 3' -53.8 NC_004681.1 + 70365 0.66 0.847213
Target:  5'- aCAGuCCUcCGUGCcacaGUGCGCGCGAg -3'
miRNA:   3'- aGUU-GGA-GCGCGaca-UACGCGCGUUg -5'
18521 3' -53.8 NC_004681.1 + 17831 0.66 0.838525
Target:  5'- gCGACCUCgGUGUUGUGcUGCuugacCGCGGCc -3'
miRNA:   3'- aGUUGGAG-CGCGACAU-ACGc----GCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 56182 0.66 0.82962
Target:  5'- uUCGGCgUCGCggaagagguuGUUGUAgUGCGCGUAGu -3'
miRNA:   3'- -AGUUGgAGCG----------CGACAU-ACGCGCGUUg -5'
18521 3' -53.8 NC_004681.1 + 61307 0.66 0.820508
Target:  5'- gCGGCgUCGCGCcagAUG-GUGCAGCg -3'
miRNA:   3'- aGUUGgAGCGCGacaUACgCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 70512 0.67 0.801701
Target:  5'- aCAGCUgUCGCGCgc---GCGCGUGGCa -3'
miRNA:   3'- aGUUGG-AGCGCGacauaCGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 67932 0.67 0.801701
Target:  5'- aCAGCCUCGcCGCggagAUGaCGCaCGACg -3'
miRNA:   3'- aGUUGGAGC-GCGaca-UAC-GCGcGUUG- -5'
18521 3' -53.8 NC_004681.1 + 27612 0.67 0.801701
Target:  5'- gUCAcCCUCggugGCGCUGgcgGCG-GCGGCg -3'
miRNA:   3'- -AGUuGGAG----CGCGACauaCGCgCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 42026 0.67 0.798817
Target:  5'- cCAACCUCGUGCgcgccaaccugaGCaGUGCAGCg -3'
miRNA:   3'- aGUUGGAGCGCGacaua-------CG-CGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 56525 0.67 0.798817
Target:  5'- -uGACCUCGCGgcccgccuccaacagGUGUGCGCuGCGGa -3'
miRNA:   3'- agUUGGAGCGCga-------------CAUACGCG-CGUUg -5'
18521 3' -53.8 NC_004681.1 + 10722 0.67 0.782187
Target:  5'- gUCAcACCUgGUGCUGg--GCGUccGCGACc -3'
miRNA:   3'- -AGU-UGGAgCGCGACauaCGCG--CGUUG- -5'
18521 3' -53.8 NC_004681.1 + 58890 0.67 0.782187
Target:  5'- gCAACUccugggCGCGCgccucgacgGUGCGCGUGACa -3'
miRNA:   3'- aGUUGGa-----GCGCGaca------UACGCGCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 30342 0.67 0.772191
Target:  5'- cCGGCCgcCGcCGCUGUG-GCGgGCGAUc -3'
miRNA:   3'- aGUUGGa-GC-GCGACAUaCGCgCGUUG- -5'
18521 3' -53.8 NC_004681.1 + 16203 0.68 0.762051
Target:  5'- aCAGCCguggCG-GCUGU--GCGCGCcGCg -3'
miRNA:   3'- aGUUGGa---GCgCGACAuaCGCGCGuUG- -5'
18521 3' -53.8 NC_004681.1 + 7270 0.68 0.762051
Target:  5'- gUCcACCUCgGCGCcGaGUGCGCcgccuGCGACg -3'
miRNA:   3'- -AGuUGGAG-CGCGaCaUACGCG-----CGUUG- -5'
18521 3' -53.8 NC_004681.1 + 46760 0.68 0.751778
Target:  5'- -gGACCg-GCGCUGc--GCGCGCAcgGCg -3'
miRNA:   3'- agUUGGagCGCGACauaCGCGCGU--UG- -5'
18521 3' -53.8 NC_004681.1 + 44806 0.68 0.741384
Target:  5'- gUggUgaCGCGCUugGUGCGCGUGACg -3'
miRNA:   3'- aGuuGgaGCGCGAcaUACGCGCGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.