miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18524 3' -53 NC_004681.1 + 16760 0.66 0.915693
Target:  5'- cCGGUCCUGcCUGucG-AC-ACGUCGGUg -3'
miRNA:   3'- -GUCGGGAU-GACuuCuUGcUGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 14504 0.66 0.915693
Target:  5'- uCGGCcgCCUGCUugcgcuUGGCGUCGGCg -3'
miRNA:   3'- -GUCG--GGAUGAcuucuuGCUGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 46638 0.66 0.909391
Target:  5'- -cGCCC-ACUGucuuuGAgGCGugGUCGcGCg -3'
miRNA:   3'- guCGGGaUGACuu---CU-UGCugCAGC-CG- -5'
18524 3' -53 NC_004681.1 + 8508 0.66 0.909391
Target:  5'- -uGCCCUuCUc--GAACGACGU-GGCg -3'
miRNA:   3'- guCGGGAuGAcuuCUUGCUGCAgCCG- -5'
18524 3' -53 NC_004681.1 + 2837 0.66 0.909391
Target:  5'- aCGGCCCacaGgUGAuggucGGAgGCGACGaguUCGGCg -3'
miRNA:   3'- -GUCGGGa--UgACU-----UCU-UGCUGC---AGCCG- -5'
18524 3' -53 NC_004681.1 + 1945 0.66 0.908746
Target:  5'- uCGGCCUU-CguugGAaccuucaacacguAGAugGACGUCGGg -3'
miRNA:   3'- -GUCGGGAuGa---CU-------------UCUugCUGCAGCCg -5'
18524 3' -53 NC_004681.1 + 48348 0.66 0.903491
Target:  5'- uCAGCCCgcgugcccguaucggACUGgcGAGCcucGGCGagGGCc -3'
miRNA:   3'- -GUCGGGa--------------UGACuuCUUG---CUGCagCCG- -5'
18524 3' -53 NC_004681.1 + 64526 0.66 0.902822
Target:  5'- cCAGCCCUcGgaGAGGAGCu-CGUCauccuuGGCg -3'
miRNA:   3'- -GUCGGGA-UgaCUUCUUGcuGCAG------CCG- -5'
18524 3' -53 NC_004681.1 + 9797 0.66 0.89599
Target:  5'- aAGCCaaGCUGGucgAGGACGAgGUCGa- -3'
miRNA:   3'- gUCGGgaUGACU---UCUUGCUgCAGCcg -5'
18524 3' -53 NC_004681.1 + 22722 0.66 0.89599
Target:  5'- gCGGCgCUGCccgcgguguccgUGGAGAAgGAgGUgGGCa -3'
miRNA:   3'- -GUCGgGAUG------------ACUUCUUgCUgCAgCCG- -5'
18524 3' -53 NC_004681.1 + 66940 0.66 0.894592
Target:  5'- gCGGCCCUggugccgcgcgccgaGCUcGAAG-GCGAcaucggggacagucaCGUCGGCc -3'
miRNA:   3'- -GUCGGGA---------------UGA-CUUCuUGCU---------------GCAGCCG- -5'
18524 3' -53 NC_004681.1 + 53829 0.66 0.888897
Target:  5'- gCGGCaCUccGgUGAGGAuggcgACGAgGUCGGCg -3'
miRNA:   3'- -GUCGgGA--UgACUUCU-----UGCUgCAGCCG- -5'
18524 3' -53 NC_004681.1 + 14242 0.66 0.888897
Target:  5'- -uGCCCUGCaccuucugcaGAAGGGCGgACGUCGcuGCc -3'
miRNA:   3'- guCGGGAUGa---------CUUCUUGC-UGCAGC--CG- -5'
18524 3' -53 NC_004681.1 + 3066 0.66 0.881549
Target:  5'- gCAGUCCUGCgcAAGAugGGaguccUCGGCg -3'
miRNA:   3'- -GUCGGGAUGacUUCUugCUgc---AGCCG- -5'
18524 3' -53 NC_004681.1 + 53617 0.66 0.881549
Target:  5'- aGGCCCagACgGAggccaAGAACGACGgcgcccuggUCGGUg -3'
miRNA:   3'- gUCGGGa-UGaCU-----UCUUGCUGC---------AGCCG- -5'
18524 3' -53 NC_004681.1 + 29610 0.67 0.866106
Target:  5'- -cGCUCUGCUGAAcucuGAuggcuCGACGUCGa- -3'
miRNA:   3'- guCGGGAUGACUU----CUu----GCUGCAGCcg -5'
18524 3' -53 NC_004681.1 + 51758 0.67 0.858025
Target:  5'- gGGCCauggGgUGggG-AUGACGUCGGa -3'
miRNA:   3'- gUCGGga--UgACuuCuUGCUGCAGCCg -5'
18524 3' -53 NC_004681.1 + 12943 0.67 0.853064
Target:  5'- aGGCCCUgagcggcaacgucacGCUGAccGGccUGACGUCGcGCu -3'
miRNA:   3'- gUCGGGA---------------UGACU--UCuuGCUGCAGC-CG- -5'
18524 3' -53 NC_004681.1 + 51425 0.67 0.849712
Target:  5'- gAGCUCcGCggcGAcGGuGAUGACGUCGGCg -3'
miRNA:   3'- gUCGGGaUGa--CU-UC-UUGCUGCAGCCG- -5'
18524 3' -53 NC_004681.1 + 64922 0.67 0.841177
Target:  5'- -cGCCCgcCUGGAGcACGAgGU-GGCg -3'
miRNA:   3'- guCGGGauGACUUCuUGCUgCAgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.