Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18524 | 5' | -62.5 | NC_004681.1 | + | 38330 | 0.71 | 0.214794 |
Target: 5'- cGGuGCCuaUGGCGCcGCCGCGggacgucuucGGCCGc -3' miRNA: 3'- -CC-CGGcgACCGCGaUGGCGUa---------CCGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 52314 | 0.68 | 0.32297 |
Target: 5'- aGGUCGgggaUGGCGggGCCGUucuUGGCCGu -3' miRNA: 3'- cCCGGCg---ACCGCgaUGGCGu--ACCGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 9626 | 0.68 | 0.33046 |
Target: 5'- aGGCCGaggGGCGgUACaccaGCA-GGCCGa -3' miRNA: 3'- cCCGGCga-CCGCgAUGg---CGUaCCGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 9400 | 0.66 | 0.44277 |
Target: 5'- cGGGuuGCcguaGGCGUUGCCGaagaaGuugccgcccauguacUGGCCAu -3' miRNA: 3'- -CCCggCGa---CCGCGAUGGCg----U---------------ACCGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 5925 | 0.69 | 0.255655 |
Target: 5'- gGGGCUGa-GGCGCUucucguGCCGCAguaccagguuggggcGGCCAg -3' miRNA: 3'- -CCCGGCgaCCGCGA------UGGCGUa--------------CCGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 52965 | 0.69 | 0.261267 |
Target: 5'- cGGGCaCGCgGGCag-GCCG-AUGGCCAg -3' miRNA: 3'- -CCCG-GCGaCCGcgaUGGCgUACCGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 42364 | 0.69 | 0.267621 |
Target: 5'- aGGCCGUgaaGGCGCcuuCCGCGggcgGGaCCAg -3' miRNA: 3'- cCCGGCGa--CCGCGau-GGCGUa---CC-GGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 32337 | 0.69 | 0.267621 |
Target: 5'- cGGGCUagacacgagGCc-GCGCUGCCGCugcgAUGGCCu -3' miRNA: 3'- -CCCGG---------CGacCGCGAUGGCG----UACCGGu -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 40481 | 0.72 | 0.16684 |
Target: 5'- cGGCCacGCUGGCGgUGCCGCucuugcUGGCg- -3' miRNA: 3'- cCCGG--CGACCGCgAUGGCGu-----ACCGgu -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 49037 | 0.68 | 0.318537 |
Target: 5'- uGGCUGCccgguucuucuugcGGCGCUGCUGgAUGGUCu -3' miRNA: 3'- cCCGGCGa-------------CCGCGAUGGCgUACCGGu -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 3129 | 0.68 | 0.301264 |
Target: 5'- uGGcGCCGCgGGUGCgggcauUGCCGC-UGGCg- -3' miRNA: 3'- -CC-CGGCGaCCGCG------AUGGCGuACCGgu -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 46939 | 0.68 | 0.294283 |
Target: 5'- cGGGgUGCcggGGCgGUUGCCGCggGGCUg -3' miRNA: 3'- -CCCgGCGa--CCG-CGAUGGCGuaCCGGu -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 39209 | 0.7 | 0.225703 |
Target: 5'- cGGUCGCggaaGGUGUUGcCCGCgcagGUGGCCAc -3' miRNA: 3'- cCCGGCGa---CCGCGAU-GGCG----UACCGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 22908 | 0.68 | 0.315607 |
Target: 5'- gGGGUCGCcccGGCGaUGCCGUAguagcGGCCc -3' miRNA: 3'- -CCCGGCGa--CCGCgAUGGCGUa----CCGGu -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 37757 | 0.7 | 0.231332 |
Target: 5'- cGGCCGCUGGCGaggccCCGCAgaaGUCGg -3' miRNA: 3'- cCCGGCGACCGCgau--GGCGUac-CGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 15756 | 0.69 | 0.274098 |
Target: 5'- -cGCCGUUGGCGU--CUGCGUGaGCCu -3' miRNA: 3'- ccCGGCGACCGCGauGGCGUAC-CGGu -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 18155 | 0.68 | 0.315607 |
Target: 5'- cGGGacaaucggaagaCCGC-GGCGCUGCCGUGaGGCg- -3' miRNA: 3'- -CCC------------GGCGaCCGCGAUGGCGUaCCGgu -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 16196 | 0.68 | 0.32297 |
Target: 5'- uGGCgGCUGuGCGC-GCCGCgGUGGUg- -3' miRNA: 3'- cCCGgCGAC-CGCGaUGGCG-UACCGgu -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 36369 | 0.7 | 0.237078 |
Target: 5'- cGGGUgGgUGGCGC-ACUGCgaagaccucccaGUGGCCGa -3' miRNA: 3'- -CCCGgCgACCGCGaUGGCG------------UACCGGU- -5' |
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18524 | 5' | -62.5 | NC_004681.1 | + | 2444 | 0.69 | 0.267621 |
Target: 5'- uGGGCCuuGUUGGCGCgcgGCaCGCAgaagugGGCg- -3' miRNA: 3'- -CCCGG--CGACCGCGa--UG-GCGUa-----CCGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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