Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18530 | 5' | -61 | NC_004681.1 | + | 42349 | 0.75 | 0.126896 |
Target: 5'- cUUCCGCgggcgggaccagcaGCUCGGCGGCCGUGuGCGg -3' miRNA: 3'- aGAGGUG--------------CGAGUCGCCGGCGCuCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 51996 | 0.66 | 0.443477 |
Target: 5'- uUCUCCAUGCU--GCGGCCaugaucuGCGAGa-- -3' miRNA: 3'- -AGAGGUGCGAguCGCCGG-------CGCUCgua -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 44683 | 0.67 | 0.435135 |
Target: 5'- ------aGUgCGGCGGCCGCGAGCGc -3' miRNA: 3'- agaggugCGaGUCGCCGGCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 36290 | 0.67 | 0.425973 |
Target: 5'- --gCCGagGUUgAGCGGCUGCGGGCGc -3' miRNA: 3'- agaGGUg-CGAgUCGCCGGCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 9243 | 0.68 | 0.34106 |
Target: 5'- uUCUCCGCGauCUCcGCGGCgGuCGGGUAc -3' miRNA: 3'- -AGAGGUGC--GAGuCGCCGgC-GCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 61863 | 0.7 | 0.281752 |
Target: 5'- gCUCCugGCcgaUGGCGGCCGCGgucugguGGCGc -3' miRNA: 3'- aGAGGugCGa--GUCGCCGGCGC-------UCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 17427 | 0.66 | 0.482572 |
Target: 5'- gUCgCCGCGCUgauccugcgugUAGCGucCCGCGGGCAc -3' miRNA: 3'- -AGaGGUGCGA-----------GUCGCc-GGCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 39700 | 0.66 | 0.452851 |
Target: 5'- aCUCCACGCucaaauUCAGuCGGUCgaauucguccgauGCGAGCu- -3' miRNA: 3'- aGAGGUGCG------AGUC-GCCGG-------------CGCUCGua -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 11633 | 0.67 | 0.438832 |
Target: 5'- -aUCCACGCgaagguggacccagUAGCgGGCCGUGuAGCAc -3' miRNA: 3'- agAGGUGCGa-------------GUCG-CCGGCGC-UCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 61758 | 0.68 | 0.373513 |
Target: 5'- cCUCCGCGg-CGGCGGCUucuGCGcGCAg -3' miRNA: 3'- aGAGGUGCgaGUCGCCGG---CGCuCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 70941 | 0.72 | 0.184692 |
Target: 5'- ---gCAUGCUC-GCGGCCGCuGAGCGUg -3' miRNA: 3'- agagGUGCGAGuCGCCGGCG-CUCGUA- -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 58750 | 0.66 | 0.463285 |
Target: 5'- --cCCGCgGCgcaGGCGGCCGUGGcGCAg -3' miRNA: 3'- agaGGUG-CGag-UCGCCGGCGCU-CGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 70124 | 0.7 | 0.252492 |
Target: 5'- gCUCCACGCUgAGCuccgagacgcgaaaGCCaGCGGGCAUa -3' miRNA: 3'- aGAGGUGCGAgUCGc-------------CGG-CGCUCGUA- -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 57902 | 0.67 | 0.435135 |
Target: 5'- uUCgCCAC-CUCGGCGGC-GCGGcGCGUg -3' miRNA: 3'- -AGaGGUGcGAGUCGCCGgCGCU-CGUA- -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 13227 | 0.66 | 0.482572 |
Target: 5'- --gCCACGaagGGCGGUgGCGGGCAg -3' miRNA: 3'- agaGGUGCgagUCGCCGgCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 10776 | 0.7 | 0.262598 |
Target: 5'- gUCUCC-CGCcuugCAcgcGaCGGCCGCGGGCAc -3' miRNA: 3'- -AGAGGuGCGa---GU---C-GCCGGCGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 47204 | 0.76 | 0.100425 |
Target: 5'- uUCUCguCGCUCAGCGGCgGCG-GCu- -3' miRNA: 3'- -AGAGguGCGAGUCGCCGgCGCuCGua -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 51727 | 0.66 | 0.44441 |
Target: 5'- --aCCugGUggucgUCGGCGGCCgccccggcGCGGGCAa -3' miRNA: 3'- agaGGugCG-----AGUCGCCGG--------CGCUCGUa -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 75486 | 0.66 | 0.44441 |
Target: 5'- aCUaCC-CGCUCAGCaGaCGCGAGCu- -3' miRNA: 3'- aGA-GGuGCGAGUCGcCgGCGCUCGua -5' |
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18530 | 5' | -61 | NC_004681.1 | + | 22619 | 0.67 | 0.434214 |
Target: 5'- uUCUCCAcggacacCGCgggCAGC-GCCGCGcGCAa -3' miRNA: 3'- -AGAGGU-------GCGa--GUCGcCGGCGCuCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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