miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18534 5' -59.2 NC_004681.1 + 68985 0.8 0.083648
Target:  5'- -gCGCCUCGAUGGCgUCGGCCgCGGCc -3'
miRNA:   3'- agGCGGAGCUGUCGgAGUCGGaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 8390 0.68 0.467383
Target:  5'- gCCGuCCUUGGCGGCgUCcgcgccaccgaGGCUcuUCAGCa -3'
miRNA:   3'- aGGC-GGAGCUGUCGgAG-----------UCGG--AGUCG- -5'
18534 5' -59.2 NC_004681.1 + 52647 0.67 0.496644
Target:  5'- cUCGUCcgCGAUAGCgUCGaaggcuGCCUCGGCc -3'
miRNA:   3'- aGGCGGa-GCUGUCGgAGU------CGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 19162 0.66 0.609602
Target:  5'- -aUGCCUCGACAGUga-AGUcgagCUCGGCg -3'
miRNA:   3'- agGCGGAGCUGUCGgagUCG----GAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 28144 0.72 0.285043
Target:  5'- aCCGCCUCGACcGCC--AGCgC-CAGCg -3'
miRNA:   3'- aGGCGGAGCUGuCGGagUCG-GaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 45176 0.71 0.291977
Target:  5'- aCCGCggCGAgGGCCUCGaccgcggcggauGCUUCGGCg -3'
miRNA:   3'- aGGCGgaGCUgUCGGAGU------------CGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 61323 0.7 0.336348
Target:  5'- uUCCGCCacguucUCGGCGGCgUCGcGCCagauggugCAGCg -3'
miRNA:   3'- -AGGCGG------AGCUGUCGgAGU-CGGa-------GUCG- -5'
18534 5' -59.2 NC_004681.1 + 9894 0.7 0.344205
Target:  5'- cUCGuCCUCGAcCAGCUU-GGCUUCAGCc -3'
miRNA:   3'- aGGC-GGAGCU-GUCGGAgUCGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 58590 0.69 0.419789
Target:  5'- -gCGCCUgGACuGCCUCGcgguucacgcggcGCC-CAGCu -3'
miRNA:   3'- agGCGGAgCUGuCGGAGU-------------CGGaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 48884 0.68 0.448378
Target:  5'- cCCGCgccCUCGACGGCCUCAcuCCaggugUAGCc -3'
miRNA:   3'- aGGCG---GAGCUGUCGGAGUc-GGa----GUCG- -5'
18534 5' -59.2 NC_004681.1 + 1227 0.68 0.438108
Target:  5'- cUCCcCCUCG-CGGCCUUcguagauGGCCUUgaGGCg -3'
miRNA:   3'- -AGGcGGAGCuGUCGGAG-------UCGGAG--UCG- -5'
18534 5' -59.2 NC_004681.1 + 66075 0.69 0.394068
Target:  5'- uUCUGCg-CGGCAGCCuucUCGGCCUUcgugccguAGCg -3'
miRNA:   3'- -AGGCGgaGCUGUCGG---AGUCGGAG--------UCG- -5'
18534 5' -59.2 NC_004681.1 + 14535 0.74 0.206458
Target:  5'- cUCCGCCUCGcggGCGGCgUagauuuucGCCUCGGCc -3'
miRNA:   3'- -AGGCGGAGC---UGUCGgAgu------CGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 45211 0.68 0.448378
Target:  5'- cCUGCg-CGACGGCgUCGGCCcCGGUc -3'
miRNA:   3'- aGGCGgaGCUGUCGgAGUCGGaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 58259 0.72 0.258606
Target:  5'- aUCCGCCgcaGACcuUCUUGGCCUCAGUc -3'
miRNA:   3'- -AGGCGGag-CUGucGGAGUCGGAGUCG- -5'
18534 5' -59.2 NC_004681.1 + 61757 0.7 0.368558
Target:  5'- cUCCGCggCGGCGGCUUCuGCgCgCAGCu -3'
miRNA:   3'- -AGGCGgaGCUGUCGGAGuCG-GaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 43284 0.68 0.448378
Target:  5'- gCCGCCgCGAUAGUa--AGCC-CAGCu -3'
miRNA:   3'- aGGCGGaGCUGUCGgagUCGGaGUCG- -5'
18534 5' -59.2 NC_004681.1 + 60166 0.67 0.496644
Target:  5'- cCCGCgucCUCGAUGGCCacggUCAGCCgguGCc -3'
miRNA:   3'- aGGCG---GAGCUGUCGG----AGUCGGaguCG- -5'
18534 5' -59.2 NC_004681.1 + 39587 0.72 0.27824
Target:  5'- cCCGCCUCG-CuGCCacCGGCCUugagcCAGCg -3'
miRNA:   3'- aGGCGGAGCuGuCGGa-GUCGGA-----GUCG- -5'
18534 5' -59.2 NC_004681.1 + 50655 0.71 0.313569
Target:  5'- uUUCGCCagCcACAGCUUCAGCgcgcgCUCAGCa -3'
miRNA:   3'- -AGGCGGa-GcUGUCGGAGUCG-----GAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.