miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18539 3' -51.6 NC_004682.1 + 50794 0.66 0.909484
Target:  5'- gGGUgUCGGGGGuauGCCagg--UACCCCa -3'
miRNA:   3'- -CCAaAGCCCUUu--UGGgcguaGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 45700 0.66 0.909483
Target:  5'- uGGccUCGGaGAu-GCCCGCAgcaCGCgCCa -3'
miRNA:   3'- -CCaaAGCC-CUuuUGGGCGUa--GUGgGG- -5'
18539 3' -51.6 NC_004682.1 + 40444 0.66 0.908153
Target:  5'- ----aCGGGAcgccgguaccuACCUGCGagACCCCg -3'
miRNA:   3'- ccaaaGCCCUuu---------UGGGCGUagUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 12828 0.66 0.902719
Target:  5'- ----gCGGcucaGAAGCCCGCAgagGCCCCc -3'
miRNA:   3'- ccaaaGCCc---UUUUGGGCGUag-UGGGG- -5'
18539 3' -51.6 NC_004682.1 + 11755 0.66 0.895674
Target:  5'- aGGUcccgaUGGGuccGACCgGCAUCAgcaucCCCCa -3'
miRNA:   3'- -CCAaa---GCCCuu-UUGGgCGUAGU-----GGGG- -5'
18539 3' -51.6 NC_004682.1 + 27499 0.66 0.895674
Target:  5'- cGGgUUCGGGGuagucACCCGU--UACCUCc -3'
miRNA:   3'- -CCaAAGCCCUuu---UGGGCGuaGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 46196 0.66 0.895674
Target:  5'- ---cUCGGcGAGGucACCgGCcagguagccGUCGCCCCa -3'
miRNA:   3'- ccaaAGCC-CUUU--UGGgCG---------UAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 42314 0.66 0.888354
Target:  5'- gGGUUgccgUCGuGGAAGACCUcuuGCucgAUCACCgCg -3'
miRNA:   3'- -CCAA----AGC-CCUUUUGGG---CG---UAGUGGgG- -5'
18539 3' -51.6 NC_004682.1 + 47591 0.66 0.888354
Target:  5'- cGGg--UGGGuu-GCCUGCGccgccgaugUCGCCCUg -3'
miRNA:   3'- -CCaaaGCCCuuuUGGGCGU---------AGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 4890 0.66 0.888354
Target:  5'- aGGgcUCGGu-GAGCCCGCGcUACUCg -3'
miRNA:   3'- -CCaaAGCCcuUUUGGGCGUaGUGGGg -5'
18539 3' -51.6 NC_004682.1 + 30347 0.66 0.880763
Target:  5'- --cUUCGGGGugacgauguGCCCGUucuggcUCGCCUCg -3'
miRNA:   3'- ccaAAGCCCUuu-------UGGGCGu-----AGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 46328 0.66 0.880763
Target:  5'- cGGUcguaGGGAAGuACCuucuccgucauCGCGUCagGCCCCg -3'
miRNA:   3'- -CCAaag-CCCUUU-UGG-----------GCGUAG--UGGGG- -5'
18539 3' -51.6 NC_004682.1 + 13532 0.66 0.880763
Target:  5'- gGGaUUCGGGAucGACCUGCu--GCCUg -3'
miRNA:   3'- -CCaAAGCCCUu-UUGGGCGuagUGGGg -5'
18539 3' -51.6 NC_004682.1 + 50524 0.66 0.880763
Target:  5'- -----aGGGngAGGCCC-CAucucUCACCCCu -3'
miRNA:   3'- ccaaagCCCu-UUUGGGcGU----AGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 39715 0.67 0.873704
Target:  5'- aGGUaccgcugCGGGuAGAACCCGagcagugcgaagacgAUCACCUCa -3'
miRNA:   3'- -CCAaa-----GCCC-UUUUGGGCg--------------UAGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 15633 0.67 0.872906
Target:  5'- -----gGGGGAAGCCgaGCGcUCGCCCg -3'
miRNA:   3'- ccaaagCCCUUUUGGg-CGU-AGUGGGg -5'
18539 3' -51.6 NC_004682.1 + 381 0.67 0.864792
Target:  5'- ----cCGGGAGcGCCCGgAgCGCUCCc -3'
miRNA:   3'- ccaaaGCCCUUuUGGGCgUaGUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 21507 0.67 0.856426
Target:  5'- --gUUCGaGGAAGGCCCcuacaccgGCAUCAaguCCUCg -3'
miRNA:   3'- ccaAAGC-CCUUUUGGG--------CGUAGU---GGGG- -5'
18539 3' -51.6 NC_004682.1 + 307 0.67 0.856425
Target:  5'- cGGUagCGGGu--ACCC-CAccuggCACCCCc -3'
miRNA:   3'- -CCAaaGCCCuuuUGGGcGUa----GUGGGG- -5'
18539 3' -51.6 NC_004682.1 + 48368 0.67 0.838973
Target:  5'- cGGUgccUUCGaucuGGuc-GCCCaggaGCAUCGCCCCc -3'
miRNA:   3'- -CCA---AAGC----CCuuuUGGG----CGUAGUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.