miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18542 5' -55.5 NC_004682.1 + 26127 0.66 0.687807
Target:  5'- gCUGCCGuacuGCUccaGGAAGAGCU-GCUCCAg -3'
miRNA:   3'- -GAUGGCu---CGG---CUUUCUUGGuCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 43706 0.66 0.68671
Target:  5'- -aGCCGAGCgucuucuCGGGcAGGuACCAGCCgCCGu -3'
miRNA:   3'- gaUGGCUCG-------GCUU-UCU-UGGUCGG-GGU- -5'
18542 5' -55.5 NC_004682.1 + 2314 0.66 0.68671
Target:  5'- --uCCGGGCCGAAgggcgacaaAGGcgacaagggcgauACCGGCCCa- -3'
miRNA:   3'- gauGGCUCGGCUU---------UCU-------------UGGUCGGGgu -5'
18542 5' -55.5 NC_004682.1 + 5272 0.66 0.685612
Target:  5'- -cGCCGcGCUGggGcugcugcucacGCCGGCCCCGg -3'
miRNA:   3'- gaUGGCuCGGCuuUcu---------UGGUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 37252 0.66 0.675711
Target:  5'- aUGCCGccacgguGGCCGugGGuggucAACCAGCCCg- -3'
miRNA:   3'- gAUGGC-------UCGGCuuUC-----UUGGUCGGGgu -5'
18542 5' -55.5 NC_004682.1 + 11317 0.66 0.673506
Target:  5'- aCUGCguGGCCGAGGGAAUCaccaccaagcgaaaGGCUCCAc -3'
miRNA:   3'- -GAUGgcUCGGCUUUCUUGG--------------UCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 2124 0.66 0.672403
Target:  5'- -cACCGgagaAGCCGGccccgaaggcgagcAGGGACCuaccgguccacaaGGCCCCAa -3'
miRNA:   3'- gaUGGC----UCGGCU--------------UUCUUGG-------------UCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 15923 0.66 0.665776
Target:  5'- --gUCGaAGCCGAAGccGCCAGaCCCCu -3'
miRNA:   3'- gauGGC-UCGGCUUUcuUGGUC-GGGGu -5'
18542 5' -55.5 NC_004682.1 + 12631 0.66 0.654707
Target:  5'- ---aCGGGCCG--GGGGCCuagAGCCCCc -3'
miRNA:   3'- gaugGCUCGGCuuUCUUGG---UCGGGGu -5'
18542 5' -55.5 NC_004682.1 + 49410 0.67 0.632516
Target:  5'- gCUcCCGAG-CGAAGGcuUCAGCCUCAg -3'
miRNA:   3'- -GAuGGCUCgGCUUUCuuGGUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 27905 0.67 0.610323
Target:  5'- aUGCUGAGgCGAAGGGu---GCCCCGc -3'
miRNA:   3'- gAUGGCUCgGCUUUCUugguCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 25233 0.67 0.609215
Target:  5'- -gGCgCGAGCCGGA--GACCGGCaagguagCCCAc -3'
miRNA:   3'- gaUG-GCUCGGCUUucUUGGUCG-------GGGU- -5'
18542 5' -55.5 NC_004682.1 + 28787 0.67 0.599251
Target:  5'- -gGCCGucaGGCCGAGAGcggacagggcGAUCAGUCCUg -3'
miRNA:   3'- gaUGGC---UCGGCUUUC----------UUGGUCGGGGu -5'
18542 5' -55.5 NC_004682.1 + 3414 0.67 0.599251
Target:  5'- --uUCGAGaCGAAGGGACUgagguucgacGGCCCCGg -3'
miRNA:   3'- gauGGCUCgGCUUUCUUGG----------UCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 42298 0.67 0.592621
Target:  5'- gCUGCCGAcucauGCggaccuuccucggugCGguAGAGCCAGCUCCGc -3'
miRNA:   3'- -GAUGGCU-----CG---------------GCuuUCUUGGUCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 46364 0.67 0.588207
Target:  5'- -gGCC---CCGGAAGAucuCCAGCCCCc -3'
miRNA:   3'- gaUGGcucGGCUUUCUu--GGUCGGGGu -5'
18542 5' -55.5 NC_004682.1 + 36244 0.67 0.588207
Target:  5'- gUACUGAGCgGgcAGGACCGgagcgucguuGUCCCAc -3'
miRNA:   3'- gAUGGCUCGgCuuUCUUGGU----------CGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 33097 0.67 0.5772
Target:  5'- uUGCCGAGCUGAgcGAaguucucgACCAGgCCgGg -3'
miRNA:   3'- gAUGGCUCGGCUuuCU--------UGGUCgGGgU- -5'
18542 5' -55.5 NC_004682.1 + 26276 0.67 0.5772
Target:  5'- aCUGCUGGGCaaGAGAGGcuCCacaGGCCCCGc -3'
miRNA:   3'- -GAUGGCUCGg-CUUUCUu-GG---UCGGGGU- -5'
18542 5' -55.5 NC_004682.1 + 2731 0.68 0.55969
Target:  5'- -cGCCGAGUCGAccGAgugaugcucgccgucACCGGCCUg- -3'
miRNA:   3'- gaUGGCUCGGCUuuCU---------------UGGUCGGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.