Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18552 | 5' | -60.8 | NC_004682.1 | + | 33958 | 0.66 | 0.442495 |
Target: 5'- -aCGCGCCGAugaGCGAGGggagACCaGC-CAg -3' miRNA: 3'- gaGCGCGGCUug-CGCUCC----UGG-CGcGU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 36978 | 0.66 | 0.442495 |
Target: 5'- -gCGCGUCGAuGCGCG-GGcCUGUGCc -3' miRNA: 3'- gaGCGCGGCU-UGCGCuCCuGGCGCGu -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 16911 | 0.66 | 0.442495 |
Target: 5'- -cCGCcaaagcagugGCCGAugGagucgauGAGGACUGCGCc -3' miRNA: 3'- gaGCG----------CGGCUugCg------CUCCUGGCGCGu -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 41791 | 0.66 | 0.433157 |
Target: 5'- gUCaGCGCUGAaguacaGCGUcGGGACuCGCGCc -3' miRNA: 3'- gAG-CGCGGCU------UGCGcUCCUG-GCGCGu -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 1304 | 0.66 | 0.423934 |
Target: 5'- --gGCGUCGAGCGCuacuuGGuCCGCGaCAg -3' miRNA: 3'- gagCGCGGCUUGCGcu---CCuGGCGC-GU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 19971 | 0.66 | 0.423934 |
Target: 5'- aUCGC-CCGcAACGCGAcuGCCGCGaCGg -3' miRNA: 3'- gAGCGcGGC-UUGCGCUccUGGCGC-GU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 34115 | 0.66 | 0.41483 |
Target: 5'- gUCGuCGCCGAACGCcGAGaacaGCCGgGaCAu -3' miRNA: 3'- gAGC-GCGGCUUGCG-CUCc---UGGCgC-GU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 7549 | 0.66 | 0.409426 |
Target: 5'- aUCGcCGCCGAGCGCuuuGAcccGGACCcagagccggacaaguGCGCu -3' miRNA: 3'- gAGC-GCGGCUUGCG---CU---CCUGG---------------CGCGu -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 34179 | 0.66 | 0.396988 |
Target: 5'- -cCGC-CCGAGCGCau--GCCGCGCAg -3' miRNA: 3'- gaGCGcGGCUUGCGcuccUGGCGCGU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 46354 | 0.66 | 0.396988 |
Target: 5'- -gCcCGCCGggUGCGAGGgaacGCCuCGCGg -3' miRNA: 3'- gaGcGCGGCuuGCGCUCC----UGGcGCGU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 36238 | 0.67 | 0.388254 |
Target: 5'- gUCGCGguaCUGAGCGgGcAGGACCGgaGCGu -3' miRNA: 3'- gAGCGC---GGCUUGCgC-UCCUGGCg-CGU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 34665 | 0.67 | 0.388253 |
Target: 5'- uUCGCGCC-AAUGcCGAccucGCCGCGCAu -3' miRNA: 3'- gAGCGCGGcUUGC-GCUcc--UGGCGCGU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 18608 | 0.67 | 0.379646 |
Target: 5'- uUCGggagaaCGCCGAGCugaaGCGAaagcuGGCCGCGCAg -3' miRNA: 3'- gAGC------GCGGCUUG----CGCUc----CUGGCGCGU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 3180 | 0.67 | 0.379646 |
Target: 5'- -gCGgGCCaGGGCGCGGGcaACCGCGUc -3' miRNA: 3'- gaGCgCGG-CUUGCGCUCc-UGGCGCGu -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 29903 | 0.67 | 0.371168 |
Target: 5'- -cCuCGCCGAACGCGccGAuCCgGCGCAg -3' miRNA: 3'- gaGcGCGGCUUGCGCucCU-GG-CGCGU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 49944 | 0.67 | 0.362819 |
Target: 5'- gUUGCGUCGGACGCGuugauccGACCGUuuacGCAc -3' miRNA: 3'- gAGCGCGGCUUGCGCuc-----CUGGCG----CGU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 8668 | 0.67 | 0.353788 |
Target: 5'- cCUCGCGUUcGGCGCGAgacaGGACUuccugaugaguaaGCGCAa -3' miRNA: 3'- -GAGCGCGGcUUGCGCU----CCUGG-------------CGCGU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 18116 | 0.68 | 0.330747 |
Target: 5'- uUCGCGCaGGGCGCGucGGACauCGCGg -3' miRNA: 3'- gAGCGCGgCUUGCGCu-CCUGgcGCGU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 29329 | 0.68 | 0.323062 |
Target: 5'- gUCgGUGCCG-ACGU--GGACCGCGUAg -3' miRNA: 3'- gAG-CGCGGCuUGCGcuCCUGGCGCGU- -5' |
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18552 | 5' | -60.8 | NC_004682.1 | + | 20670 | 0.68 | 0.323062 |
Target: 5'- cCUgGCGUCGGuGCcCGAGGACaagGCGCAg -3' miRNA: 3'- -GAgCGCGGCU-UGcGCUCCUGg--CGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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