miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18556 3' -54.2 NC_004682.1 + 21703 0.66 0.781264
Target:  5'- cGCCgaACUCGAACUGGAGaacgccgaaCUCcGGGCgaAGCu -3'
miRNA:   3'- -UGG--UGAGCUUGGCUUC---------GAG-CCUG--UCG- -5'
18556 3' -54.2 NC_004682.1 + 36143 0.66 0.781264
Target:  5'- cGCCACgCGAcgugugGCCGAugcugucccAGC-CGGuCGGCg -3'
miRNA:   3'- -UGGUGaGCU------UGGCU---------UCGaGCCuGUCG- -5'
18556 3' -54.2 NC_004682.1 + 4734 0.66 0.78026
Target:  5'- gGCCACgaaguggaUCGAguaccacGCCGAAGCcgacgacugCGGAgacCAGCa -3'
miRNA:   3'- -UGGUG--------AGCU-------UGGCUUCGa--------GCCU---GUCG- -5'
18556 3' -54.2 NC_004682.1 + 15238 0.66 0.778245
Target:  5'- aGCC-CUCGGACCacuucGAguucacguucaugcGGCUCauggaGGGCGGCg -3'
miRNA:   3'- -UGGuGAGCUUGG-----CU--------------UCGAG-----CCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 5417 0.66 0.739964
Target:  5'- gACCACucaUCGAGCgGAGGUgaggCGcGAaaCAGCa -3'
miRNA:   3'- -UGGUG---AGCUUGgCUUCGa---GC-CU--GUCG- -5'
18556 3' -54.2 NC_004682.1 + 25568 0.66 0.739964
Target:  5'- cGCCACUgGGccacGCCGuGGGCcuugacgCGGugGGCu -3'
miRNA:   3'- -UGGUGAgCU----UGGC-UUCGa------GCCugUCG- -5'
18556 3' -54.2 NC_004682.1 + 49249 0.66 0.739964
Target:  5'- uGCCACUUGGugCGAuccgggauGGCgUCGGcguCGGUc -3'
miRNA:   3'- -UGGUGAGCUugGCU--------UCG-AGCCu--GUCG- -5'
18556 3' -54.2 NC_004682.1 + 36834 0.66 0.729332
Target:  5'- uGCCGC-CgGGGCCGAAcacacCGGACGGCu -3'
miRNA:   3'- -UGGUGaG-CUUGGCUUcga--GCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 45548 0.67 0.718601
Target:  5'- cCCGCcUGcGCCGggGC-CGGcgugaGCAGCa -3'
miRNA:   3'- uGGUGaGCuUGGCuuCGaGCC-----UGUCG- -5'
18556 3' -54.2 NC_004682.1 + 6334 0.67 0.717523
Target:  5'- cCCGCUgGGuccgggacuccccGCCGAcacGGCgCGGGCGGUg -3'
miRNA:   3'- uGGUGAgCU-------------UGGCU---UCGaGCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 34550 0.67 0.701255
Target:  5'- aGCCACUUGAAcuccucguucguCCGGGcCUCGGAguacuuccauccgcaCAGCg -3'
miRNA:   3'- -UGGUGAGCUU------------GGCUUcGAGCCU---------------GUCG- -5'
18556 3' -54.2 NC_004682.1 + 38019 0.67 0.69689
Target:  5'- cGCCucCUCGGuGCCGAGGUgccucagCGccGACAGCg -3'
miRNA:   3'- -UGGu-GAGCU-UGGCUUCGa------GC--CUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 43600 0.67 0.685932
Target:  5'- cACCACagcgUGAACCGAgccuguuccAGCgUCGGcaugaACGGCg -3'
miRNA:   3'- -UGGUGa---GCUUGGCU---------UCG-AGCC-----UGUCG- -5'
18556 3' -54.2 NC_004682.1 + 6857 0.67 0.674922
Target:  5'- gGCCcgaACUcCGuugugucccAACUGAucgAGCUUGGACAGCg -3'
miRNA:   3'- -UGG---UGA-GC---------UUGGCU---UCGAGCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 9436 0.67 0.674922
Target:  5'- uUCGCUCGGucACCGAcgcAGCUgccCGGAC-GCu -3'
miRNA:   3'- uGGUGAGCU--UGGCU---UCGA---GCCUGuCG- -5'
18556 3' -54.2 NC_004682.1 + 38317 0.67 0.674922
Target:  5'- gACCAUgaacgCGAACUc-AGCUucgcaaCGGACAGCg -3'
miRNA:   3'- -UGGUGa----GCUUGGcuUCGA------GCCUGUCG- -5'
18556 3' -54.2 NC_004682.1 + 29925 0.68 0.65279
Target:  5'- cACCACuUCGcaGGCCGAagaugauccacAGCUUGGggaacuGCAGCu -3'
miRNA:   3'- -UGGUG-AGC--UUGGCU-----------UCGAGCC------UGUCG- -5'
18556 3' -54.2 NC_004682.1 + 30373 0.68 0.641689
Target:  5'- gGCuCGcCUCGcGCUGGAGCUUGGcgcuCAGCc -3'
miRNA:   3'- -UG-GU-GAGCuUGGCUUCGAGCCu---GUCG- -5'
18556 3' -54.2 NC_004682.1 + 21316 0.68 0.640578
Target:  5'- gACaACUCGGGCUGggGCagugagaccgccuUCGG-CGGCu -3'
miRNA:   3'- -UGgUGAGCUUGGCuuCG-------------AGCCuGUCG- -5'
18556 3' -54.2 NC_004682.1 + 11509 0.68 0.630579
Target:  5'- cCCACUCa-----GGGCUCGGGCAGCc -3'
miRNA:   3'- uGGUGAGcuuggcUUCGAGCCUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.