miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18566 5' -56 NC_004682.1 + 13987 0.66 0.679941
Target:  5'- -gAUCGUCGCCucgcaguggccugggGUCAUCGaGGCuGACg -3'
miRNA:   3'- cgUAGCGGCGG---------------UAGUAGCgCCGcUUG- -5'
18566 5' -56 NC_004682.1 + 20591 0.66 0.67557
Target:  5'- gGCGUgGUCGCUGgcgagCGUgGUGGCGAc- -3'
miRNA:   3'- -CGUAgCGGCGGUa----GUAgCGCCGCUug -5'
18566 5' -56 NC_004682.1 + 19165 0.66 0.67557
Target:  5'- cCGUUGCCGCC-UCGUCcaguuCGGCacuccGAACg -3'
miRNA:   3'- cGUAGCGGCGGuAGUAGc----GCCG-----CUUG- -5'
18566 5' -56 NC_004682.1 + 14140 0.66 0.67557
Target:  5'- -gAUCGCCaGCCAgga--GCGGaCGGACu -3'
miRNA:   3'- cgUAGCGG-CGGUaguagCGCC-GCUUG- -5'
18566 5' -56 NC_004682.1 + 30900 0.66 0.664615
Target:  5'- --uUCGCCuCgGUgAUCGCcucGGCGAGCg -3'
miRNA:   3'- cguAGCGGcGgUAgUAGCG---CCGCUUG- -5'
18566 5' -56 NC_004682.1 + 35162 0.66 0.653629
Target:  5'- cCAUCGCCGCgAUa--C-CGGUGAGCu -3'
miRNA:   3'- cGUAGCGGCGgUAguaGcGCCGCUUG- -5'
18566 5' -56 NC_004682.1 + 44665 0.66 0.653629
Target:  5'- aGCGUCGUCguagccgaaauaGCCGUCGacUCGCaGCGGc- -3'
miRNA:   3'- -CGUAGCGG------------CGGUAGU--AGCGcCGCUug -5'
18566 5' -56 NC_004682.1 + 34754 0.66 0.642624
Target:  5'- uCGUaGCUGCCGUUGcCGUGcGCGAACg -3'
miRNA:   3'- cGUAgCGGCGGUAGUaGCGC-CGCUUG- -5'
18566 5' -56 NC_004682.1 + 31458 0.66 0.642624
Target:  5'- gGCGUCGUgacauacaGCUugcaGUCGCGGuCGAACg -3'
miRNA:   3'- -CGUAGCGg-------CGGuag-UAGCGCC-GCUUG- -5'
18566 5' -56 NC_004682.1 + 8649 0.66 0.631609
Target:  5'- ---aCGCCGCCGUCugCGCGGUc--- -3'
miRNA:   3'- cguaGCGGCGGUAGuaGCGCCGcuug -5'
18566 5' -56 NC_004682.1 + 23322 0.66 0.631609
Target:  5'- ---aCGCCGCCGUCGaugacaaGCGGCa--- -3'
miRNA:   3'- cguaGCGGCGGUAGUag-----CGCCGcuug -5'
18566 5' -56 NC_004682.1 + 14697 0.66 0.631609
Target:  5'- aGCAUCgGCCaCaCGUCG-CGUGGCGAc- -3'
miRNA:   3'- -CGUAG-CGGcG-GUAGUaGCGCCGCUug -5'
18566 5' -56 NC_004682.1 + 43732 0.66 0.630508
Target:  5'- -gAUCGCucgCGCCGUCGUaGCGGCccgaccgGAACc -3'
miRNA:   3'- cgUAGCG---GCGGUAGUAgCGCCG-------CUUG- -5'
18566 5' -56 NC_004682.1 + 21594 0.66 0.620595
Target:  5'- uCAUCGCCGCCGUCca--CGGCu--- -3'
miRNA:   3'- cGUAGCGGCGGUAGuagcGCCGcuug -5'
18566 5' -56 NC_004682.1 + 32601 0.66 0.620595
Target:  5'- gGCGUCaGCCGCC-UCAU-GCcaGCGGGCc -3'
miRNA:   3'- -CGUAG-CGGCGGuAGUAgCGc-CGCUUG- -5'
18566 5' -56 NC_004682.1 + 33796 0.66 0.620595
Target:  5'- gGCGggaGCCGCCugggccUCGUCGuCGGCagGGGCc -3'
miRNA:   3'- -CGUag-CGGCGGu-----AGUAGC-GCCG--CUUG- -5'
18566 5' -56 NC_004682.1 + 36569 0.67 0.609591
Target:  5'- uGCGgcUUGCCGCCGUCGgagUCGUaGGUcuGGACc -3'
miRNA:   3'- -CGU--AGCGGCGGUAGU---AGCG-CCG--CUUG- -5'
18566 5' -56 NC_004682.1 + 3152 0.67 0.598606
Target:  5'- cGCAgcaGCCGCCAacUCGggcacCaCGGCGGGCc -3'
miRNA:   3'- -CGUag-CGGCGGU--AGUa----GcGCCGCUUG- -5'
18566 5' -56 NC_004682.1 + 49341 0.67 0.596412
Target:  5'- -gGUCGCCGUagAUCAUCGCugucuccucucaGCGGACu -3'
miRNA:   3'- cgUAGCGGCGg-UAGUAGCGc-----------CGCUUG- -5'
18566 5' -56 NC_004682.1 + 10955 0.67 0.576731
Target:  5'- cGCAgaacgCGCU-CCGUCGUCGCccgaacggGGCGAAg -3'
miRNA:   3'- -CGUa----GCGGcGGUAGUAGCG--------CCGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.