miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18568 5' -56.6 NC_004682.1 + 18283 0.66 0.652567
Target:  5'- gCGAACuGCUGAG-GCAGCucCGGGAgAUc -3'
miRNA:   3'- gGCUUG-CGGCUCuUGUCG--GCCCUgUA- -5'
18568 5' -56.6 NC_004682.1 + 42714 0.66 0.651475
Target:  5'- aCCGGgucgcggccuccaGCGUCGGGAacgggguucgcgACGGCUGGGuCAg -3'
miRNA:   3'- -GGCU-------------UGCGGCUCU------------UGUCGGCCCuGUa -5'
18568 5' -56.6 NC_004682.1 + 2947 0.66 0.640552
Target:  5'- aUCGcAGCGCUcGGAGCacggcagAGCUGGGACGc -3'
miRNA:   3'- -GGC-UUGCGGcUCUUG-------UCGGCCCUGUa -5'
18568 5' -56.6 NC_004682.1 + 50724 0.66 0.630715
Target:  5'- -aGggUGCCGAGAcgggguGCAGaCgGGGugAg -3'
miRNA:   3'- ggCuuGCGGCUCU------UGUC-GgCCCugUa -5'
18568 5' -56.6 NC_004682.1 + 24646 0.66 0.630715
Target:  5'- gCCaGGAUGUCGAG-GCGuGCCGGGAa-- -3'
miRNA:   3'- -GG-CUUGCGGCUCuUGU-CGGCCCUgua -5'
18568 5' -56.6 NC_004682.1 + 28788 0.66 0.619786
Target:  5'- gCCGucAgGCCGAGAGCGGaCaGGGCGa -3'
miRNA:   3'- -GGCu-UgCGGCUCUUGUCgGcCCUGUa -5'
18568 5' -56.6 NC_004682.1 + 41330 0.66 0.608868
Target:  5'- cCUuGACGCCGAacAGCAGCCgcuggGGGACGc -3'
miRNA:   3'- -GGcUUGCGGCUc-UUGUCGG-----CCCUGUa -5'
18568 5' -56.6 NC_004682.1 + 31744 0.66 0.608868
Target:  5'- uCCGAGgaaGCCcAGAugAGCCcGGACGa -3'
miRNA:   3'- -GGCUUg--CGGcUCUugUCGGcCCUGUa -5'
18568 5' -56.6 NC_004682.1 + 18843 0.66 0.59797
Target:  5'- cUCGucuCGCCGcccGAGCAGCCGGucCAg -3'
miRNA:   3'- -GGCuu-GCGGCu--CUUGUCGGCCcuGUa -5'
18568 5' -56.6 NC_004682.1 + 7791 0.67 0.587101
Target:  5'- aCC-GugGCCGAGAAgGaCUGGGACGc -3'
miRNA:   3'- -GGcUugCGGCUCUUgUcGGCCCUGUa -5'
18568 5' -56.6 NC_004682.1 + 43959 0.67 0.576268
Target:  5'- gCGGACGCUGuccaagcucGAuCAGuuGGGACAc -3'
miRNA:   3'- gGCUUGCGGCu--------CUuGUCggCCCUGUa -5'
18568 5' -56.6 NC_004682.1 + 41753 0.67 0.554747
Target:  5'- aUCGAcaGCGaCCGGGAG-AGCUGGGugAa -3'
miRNA:   3'- -GGCU--UGC-GGCUCUUgUCGGCCCugUa -5'
18568 5' -56.6 NC_004682.1 + 28119 0.67 0.554747
Target:  5'- gCGAGCGCggacaGAGAccucgaAGCCGaGGACGUa -3'
miRNA:   3'- gGCUUGCGg----CUCUug----UCGGC-CCUGUA- -5'
18568 5' -56.6 NC_004682.1 + 4941 0.67 0.544074
Target:  5'- gCGAGC-CCGAGuGCGGCUacucgcgcuGGGACGa -3'
miRNA:   3'- gGCUUGcGGCUCuUGUCGG---------CCCUGUa -5'
18568 5' -56.6 NC_004682.1 + 27879 0.68 0.533469
Target:  5'- gCGAGCGCCagGGGAGCAGCgacGACGUa -3'
miRNA:   3'- gGCUUGCGG--CUCUUGUCGgccCUGUA- -5'
18568 5' -56.6 NC_004682.1 + 36818 0.68 0.522938
Target:  5'- uCCaGAugGCCGAacauGCcGCCGGGGCc- -3'
miRNA:   3'- -GG-CUugCGGCUcu--UGuCGGCCCUGua -5'
18568 5' -56.6 NC_004682.1 + 3614 0.68 0.50937
Target:  5'- cCCGGAagacguagacaaccUGCCGGGGACGGUgGGGGa-- -3'
miRNA:   3'- -GGCUU--------------GCGGCUCUUGUCGgCCCUgua -5'
18568 5' -56.6 NC_004682.1 + 133 0.68 0.498006
Target:  5'- cUCGAcCGCCGgcacgggccggcacAGGGCcacacagAGCCGGGACAc -3'
miRNA:   3'- -GGCUuGCGGC--------------UCUUG-------UCGGCCCUGUa -5'
18568 5' -56.6 NC_004682.1 + 12474 0.68 0.491855
Target:  5'- uCCucGCGgaCGGGGACgAGCCGGGGCu- -3'
miRNA:   3'- -GGcuUGCg-GCUCUUG-UCGGCCCUGua -5'
18568 5' -56.6 NC_004682.1 + 20374 0.68 0.481684
Target:  5'- aCGGugGCCGAGcagacCGGUCuGGACAUg -3'
miRNA:   3'- gGCUugCGGCUCuu---GUCGGcCCUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.