miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18569 3' -62.2 NC_004682.1 + 13836 0.66 0.366025
Target:  5'- cGAGGCCGGaagGCCgAGGCCaaccUGGCa -3'
miRNA:   3'- cCUCCGGUCgg-UGG-UCCGGcu--ACCGc -5'
18569 3' -62.2 NC_004682.1 + 38009 0.66 0.363535
Target:  5'- uGGGGGCCucugcgggcuucugAGCCGCUc-GCUGgcGGCGu -3'
miRNA:   3'- -CCUCCGG--------------UCGGUGGucCGGCuaCCGC- -5'
18569 3' -62.2 NC_004682.1 + 16904 0.66 0.348838
Target:  5'- -cAGGCUA-CCGCCAaagcaguGGCCGAUGGa- -3'
miRNA:   3'- ccUCCGGUcGGUGGU-------CCGGCUACCgc -5'
18569 3' -62.2 NC_004682.1 + 3241 0.66 0.341651
Target:  5'- cGAGGCCGGUCGCCAGcgcguccuCCGGgaGCGc -3'
miRNA:   3'- cCUCCGGUCGGUGGUCc-------GGCUacCGC- -5'
18569 3' -62.2 NC_004682.1 + 18333 0.66 0.341651
Target:  5'- aGGaAGGCCcGUUcUCGGGCCGAggcugGGUGa -3'
miRNA:   3'- -CC-UCCGGuCGGuGGUCCGGCUa----CCGC- -5'
18569 3' -62.2 NC_004682.1 + 10825 0.66 0.326064
Target:  5'- --cGGUCGGCCACCgaGGGCCuc-GGCc -3'
miRNA:   3'- ccuCCGGUCGGUGG--UCCGGcuaCCGc -5'
18569 3' -62.2 NC_004682.1 + 26289 0.67 0.321492
Target:  5'- aGAGGCUccacaGGCC-CCGcaguGGCCGAccccgagcauuggguUGGCGg -3'
miRNA:   3'- cCUCCGG-----UCGGuGGU----CCGGCU---------------ACCGC- -5'
18569 3' -62.2 NC_004682.1 + 44179 0.67 0.31847
Target:  5'- -uGGGCCuGCCACCGGGUgaauccacucauCGAagUGaGCGa -3'
miRNA:   3'- ccUCCGGuCGGUGGUCCG------------GCU--AC-CGC- -5'
18569 3' -62.2 NC_004682.1 + 7933 0.67 0.31847
Target:  5'- gGGGGGCCGGCgGgCCAuGaGCa-GUGGCGc -3'
miRNA:   3'- -CCUCCGGUCGgU-GGU-C-CGgcUACCGC- -5'
18569 3' -62.2 NC_004682.1 + 18372 0.67 0.31847
Target:  5'- -cGGGUCAGUCugUGGgcgaagcguucGCCGAUGGCa -3'
miRNA:   3'- ccUCCGGUCGGugGUC-----------CGGCUACCGc -5'
18569 3' -62.2 NC_004682.1 + 16862 0.67 0.313978
Target:  5'- uGGuGGCUGGCCuCCuGGCUGGUcuccccucgcucaucGGCGc -3'
miRNA:   3'- -CCuCCGGUCGGuGGuCCGGCUA---------------CCGC- -5'
18569 3' -62.2 NC_004682.1 + 7685 0.67 0.311011
Target:  5'- -aAGGCCGGgacgaCCGCCuGGaCCGGagcgUGGCGg -3'
miRNA:   3'- ccUCCGGUC-----GGUGGuCC-GGCU----ACCGC- -5'
18569 3' -62.2 NC_004682.1 + 17340 0.67 0.311011
Target:  5'- cGAaGCUGGCCccgcAgCAGGCCGcUGGCGg -3'
miRNA:   3'- cCUcCGGUCGG----UgGUCCGGCuACCGC- -5'
18569 3' -62.2 NC_004682.1 + 10756 0.67 0.303685
Target:  5'- -cGGGCCAcacagcGCCucUCGGGCgCGGUGGUGg -3'
miRNA:   3'- ccUCCGGU------CGGu-GGUCCG-GCUACCGC- -5'
18569 3' -62.2 NC_004682.1 + 49868 0.67 0.296492
Target:  5'- uGAGGgucgucgaaaCCaAGCUcggguaucgGCCGGuGCCGAUGGCGg -3'
miRNA:   3'- cCUCC----------GG-UCGG---------UGGUC-CGGCUACCGC- -5'
18569 3' -62.2 NC_004682.1 + 11489 0.67 0.296492
Target:  5'- aGGAGGCCGgugcuacggcuGCCGCCGcGCCaacGGCa -3'
miRNA:   3'- -CCUCCGGU-----------CGGUGGUcCGGcuaCCGc -5'
18569 3' -62.2 NC_004682.1 + 25253 0.67 0.29578
Target:  5'- ----cUCAGCCGCCAGcgcacacaccucaGCCGGUGGCa -3'
miRNA:   3'- ccuccGGUCGGUGGUC-------------CGGCUACCGc -5'
18569 3' -62.2 NC_004682.1 + 17416 0.67 0.282505
Target:  5'- uGGAGuCCGGUCugCAGGC-GAUGGg- -3'
miRNA:   3'- -CCUCcGGUCGGugGUCCGgCUACCgc -5'
18569 3' -62.2 NC_004682.1 + 14352 0.67 0.282505
Target:  5'- uGGAGGC--GCUGCgAGGCCGGaacgaGGCGu -3'
miRNA:   3'- -CCUCCGguCGGUGgUCCGGCUa----CCGC- -5'
18569 3' -62.2 NC_004682.1 + 48605 0.68 0.269047
Target:  5'- -cGGGCCGGUgggaccUGCUGGGCCGGUGGg- -3'
miRNA:   3'- ccUCCGGUCG------GUGGUCCGGCUACCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.