miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18570 5' -59.7 NC_004682.1 + 18070 0.66 0.44675
Target:  5'- uCCAgcacGCC-AGCGCCGaGGCGUaCGACGa -3'
miRNA:   3'- -GGUa---CGGcUCGCGGUgUCGCG-GCUGU- -5'
18570 5' -59.7 NC_004682.1 + 7297 0.68 0.34089
Target:  5'- aCCGUGCUGAGgG--ACAGCGaCGGCAa -3'
miRNA:   3'- -GGUACGGCUCgCggUGUCGCgGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 33121 0.69 0.290891
Target:  5'- aCCAgGCCGGGgaucaucggcuggauCuGCUGCAGCGCCGugGu -3'
miRNA:   3'- -GGUaCGGCUC---------------G-CGGUGUCGCGGCugU- -5'
18570 5' -59.7 NC_004682.1 + 33922 0.98 0.002102
Target:  5'- uCCAUGCCGAG-GCCACAGCGCCGACAc -3'
miRNA:   3'- -GGUACGGCUCgCGGUGUCGCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 7697 0.67 0.418569
Target:  5'- aCCGccugGaCCgGAGCGUgGCGGCuGCCGACc -3'
miRNA:   3'- -GGUa---C-GG-CUCGCGgUGUCG-CGGCUGu -5'
18570 5' -59.7 NC_004682.1 + 49116 0.66 0.475956
Target:  5'- gCGUGCCGA-CGUaggACAGaGCCGACu -3'
miRNA:   3'- gGUACGGCUcGCGg--UGUCgCGGCUGu -5'
18570 5' -59.7 NC_004682.1 + 4501 0.66 0.475956
Target:  5'- cCCGgcggGCuCGGG-GCCGCAcGCGCuuCGACAg -3'
miRNA:   3'- -GGUa---CG-GCUCgCGGUGU-CGCG--GCUGU- -5'
18570 5' -59.7 NC_004682.1 + 19824 0.66 0.456376
Target:  5'- uCCAggucGCCGAgGCGCUgauGCGCCGGg- -3'
miRNA:   3'- -GGUa---CGGCU-CGCGGuguCGCGGCUgu -5'
18570 5' -59.7 NC_004682.1 + 49374 0.66 0.455408
Target:  5'- gCC-UGCCGGGaaguugacgggcuCGCCGCuGGCGUCGAg- -3'
miRNA:   3'- -GGuACGGCUC-------------GCGGUG-UCGCGGCUgu -5'
18570 5' -59.7 NC_004682.1 + 27874 0.68 0.34089
Target:  5'- aCCAcG-CGAGCGCCaggggaGCAGCGaCGACGu -3'
miRNA:   3'- -GGUaCgGCUCGCGG------UGUCGCgGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 36241 0.67 0.382728
Target:  5'- gCCGUGCCcaccgGGGCGguguaCACGuaGCCGACGg -3'
miRNA:   3'- -GGUACGG-----CUCGCg----GUGUcgCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 34172 0.67 0.382728
Target:  5'- aCCGcUGCCgcccGAGCGCaugccgCGCAGCGCCuGCu -3'
miRNA:   3'- -GGU-ACGG----CUCGCG------GUGUCGCGGcUGu -5'
18570 5' -59.7 NC_004682.1 + 28842 0.66 0.436293
Target:  5'- gCCGUaGCCGGGUucaCCgacguaguacggaGCAGCGuCCGACAc -3'
miRNA:   3'- -GGUA-CGGCUCGc--GG-------------UGUCGC-GGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 43703 0.68 0.356391
Target:  5'- cCCA-GCCGAGCGUCuucucggGCAGguaccagccgcCGUCGACAg -3'
miRNA:   3'- -GGUaCGGCUCGCGG-------UGUC-----------GCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 45765 0.67 0.418569
Target:  5'- -gGUGCgGgAGCaGCCgguGCGGCGUCGGCGu -3'
miRNA:   3'- ggUACGgC-UCG-CGG---UGUCGCGGCUGU- -5'
18570 5' -59.7 NC_004682.1 + 11485 0.67 0.391495
Target:  5'- uCCAaggagGCCG-GUGCUACGGCuGCCGcCGc -3'
miRNA:   3'- -GGUa----CGGCuCGCGGUGUCG-CGGCuGU- -5'
18570 5' -59.7 NC_004682.1 + 38354 0.68 0.34089
Target:  5'- aCCAUGuuGuGCuGCCACAGCGa-GAUc -3'
miRNA:   3'- -GGUACggCuCG-CGGUGUCGCggCUGu -5'
18570 5' -59.7 NC_004682.1 + 29050 0.68 0.33293
Target:  5'- gCAUGCCGAcCGCaCGgAGCGUCGGg- -3'
miRNA:   3'- gGUACGGCUcGCG-GUgUCGCGGCUgu -5'
18570 5' -59.7 NC_004682.1 + 36170 0.67 0.418569
Target:  5'- cCCA-GCCGgucGGCGuCCACAG-GCCGGu- -3'
miRNA:   3'- -GGUaCGGC---UCGC-GGUGUCgCGGCUgu -5'
18570 5' -59.7 NC_004682.1 + 33307 0.67 0.395928
Target:  5'- cCCAgugaGCCGAGCacguugccgaucagGCCcgagagcgagguCAGCGCUGGCAu -3'
miRNA:   3'- -GGUa---CGGCUCG--------------CGGu-----------GUCGCGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.