miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18574 5' -55.4 NC_004682.1 + 50707 0.66 0.698967
Target:  5'- gUGCCGGcC-CGuGCCGGcGGuCGAGCCc -3'
miRNA:   3'- aAUGGCCuGaGC-UGGUC-CUuGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 50302 0.73 0.302914
Target:  5'- -gACCGGucACUgguUGACCAGGAcaACGAGaCCa -3'
miRNA:   3'- aaUGGCC--UGA---GCUGGUCCU--UGCUC-GG- -5'
18574 5' -55.4 NC_004682.1 + 49536 0.72 0.326246
Target:  5'- -aACCGGagaggggacgGCUCGACCccuccGGGGCGGGUCu -3'
miRNA:   3'- aaUGGCC----------UGAGCUGGu----CCUUGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 48200 0.67 0.633024
Target:  5'- --uCUGGucccauguCUCGACCAGGAcGCcGGCCu -3'
miRNA:   3'- aauGGCCu-------GAGCUGGUCCU-UGcUCGG- -5'
18574 5' -55.4 NC_004682.1 + 46605 0.66 0.67713
Target:  5'- -aGCgGGACgcacguucUCGACCAGGcgcagcaucuGCGGGCg -3'
miRNA:   3'- aaUGgCCUG--------AGCUGGUCCu---------UGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 44370 0.71 0.413347
Target:  5'- -cACCGGACUuugacgCGAUCuGGGAGCGaAGCUc -3'
miRNA:   3'- aaUGGCCUGA------GCUGG-UCCUUGC-UCGG- -5'
18574 5' -55.4 NC_004682.1 + 43488 0.66 0.688075
Target:  5'- -aGCUGGAagUCGucACCGGGggUGuuGCCg -3'
miRNA:   3'- aaUGGCCUg-AGC--UGGUCCuuGCu-CGG- -5'
18574 5' -55.4 NC_004682.1 + 43449 0.67 0.644078
Target:  5'- aUGCCguaGGuCUCGGCCAGGGcaACGcuguagacGCCa -3'
miRNA:   3'- aAUGG---CCuGAGCUGGUCCU--UGCu-------CGG- -5'
18574 5' -55.4 NC_004682.1 + 43069 0.67 0.62197
Target:  5'- ---aCGGugUCGuuGCCGGGGAUGuGCg -3'
miRNA:   3'- aaugGCCugAGC--UGGUCCUUGCuCGg -5'
18574 5' -55.4 NC_004682.1 + 43006 0.68 0.552909
Target:  5'- aUGCCGGugUCGACCgccuugcccgacAGGAuguccugguacGCGucccaguccuucucGGCCa -3'
miRNA:   3'- aAUGGCCugAGCUGG------------UCCU-----------UGC--------------UCGG- -5'
18574 5' -55.4 NC_004682.1 + 42473 0.67 0.62197
Target:  5'- -gGCCGGGgUCGGCCucccuGCG-GCCa -3'
miRNA:   3'- aaUGGCCUgAGCUGGuccu-UGCuCGG- -5'
18574 5' -55.4 NC_004682.1 + 41235 0.75 0.228388
Target:  5'- -gGCCuuGGAUUCGugguccucgaacGCCAGGAuGCGAGCCa -3'
miRNA:   3'- aaUGG--CCUGAGC------------UGGUCCU-UGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 38778 0.66 0.684797
Target:  5'- -gGuuGGugUCGGCCAGcGAcACGAccuuggucgucucgGCCa -3'
miRNA:   3'- aaUggCCugAGCUGGUC-CU-UGCU--------------CGG- -5'
18574 5' -55.4 NC_004682.1 + 38524 0.68 0.567021
Target:  5'- -gAUCGGGCUCuGCCGcagcaGAGCGAGCg -3'
miRNA:   3'- aaUGGCCUGAGcUGGUc----CUUGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 37466 0.66 0.666141
Target:  5'- --cCCGGACcUGAuCCAGGAACugcuuGCCc -3'
miRNA:   3'- aauGGCCUGaGCU-GGUCCUUGcu---CGG- -5'
18574 5' -55.4 NC_004682.1 + 37337 0.67 0.599899
Target:  5'- gUACCGGACU-GGCCuugcaccuGGAAuCGcGCCu -3'
miRNA:   3'- aAUGGCCUGAgCUGGu-------CCUU-GCuCGG- -5'
18574 5' -55.4 NC_004682.1 + 36191 0.68 0.53462
Target:  5'- -gGCCGGugUCGGUCAGGuucagcgucuUGAGCUg -3'
miRNA:   3'- aaUGGCCugAGCUGGUCCuu--------GCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 35073 0.71 0.376818
Target:  5'- -gACCGGuaGCUCcuugaugagGACCAGG-GCGAGCUu -3'
miRNA:   3'- aaUGGCC--UGAG---------CUGGUCCuUGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 34928 0.67 0.644078
Target:  5'- -gGCuCGGcUUCGACUuGGAAUGuGCCg -3'
miRNA:   3'- aaUG-GCCuGAGCUGGuCCUUGCuCGG- -5'
18574 5' -55.4 NC_004682.1 + 34188 0.69 0.513385
Target:  5'- cUGCC-GACUCcACCAGGGACucaGAGUCc -3'
miRNA:   3'- aAUGGcCUGAGcUGGUCCUUG---CUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.