miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18574 5' -55.4 NC_004682.1 + 996 0.66 0.688075
Target:  5'- -aACCGcAUUCGugCGGGGaccacgugACGAGCg -3'
miRNA:   3'- aaUGGCcUGAGCugGUCCU--------UGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 9599 0.69 0.48221
Target:  5'- --uCCGGGCUCGACUAcgcGGAGCuuGAGUUc -3'
miRNA:   3'- aauGGCCUGAGCUGGU---CCUUG--CUCGG- -5'
18574 5' -55.4 NC_004682.1 + 44370 0.71 0.413347
Target:  5'- -cACCGGACUuugacgCGAUCuGGGAGCGaAGCUc -3'
miRNA:   3'- aaUGGCCUGA------GCUGG-UCCUUGC-UCGG- -5'
18574 5' -55.4 NC_004682.1 + 32644 1.08 0.000998
Target:  5'- cUUACCGGACUCGACCAGGAACGAGCCc -3'
miRNA:   3'- -AAUGGCCUGAGCUGGUCCUUGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 25062 0.66 0.654017
Target:  5'- -aGCCGGACcccgaggucCGAcuguucacaCCAGGGgagauccccgaagGCGAGCCg -3'
miRNA:   3'- aaUGGCCUGa--------GCU---------GGUCCU-------------UGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 32502 0.67 0.644078
Target:  5'- --cCCaGcCUCGGCCcGaGAACGGGCCu -3'
miRNA:   3'- aauGGcCuGAGCUGGuC-CUUGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 10601 0.67 0.633024
Target:  5'- -cACUGGGCaUUGACCAGGccguguuCGucGGCCa -3'
miRNA:   3'- aaUGGCCUG-AGCUGGUCCuu-----GC--UCGG- -5'
18574 5' -55.4 NC_004682.1 + 43069 0.67 0.62197
Target:  5'- ---aCGGugUCGuuGCCGGGGAUGuGCg -3'
miRNA:   3'- aaugGCCugAGC--UGGUCCUUGCuCGg -5'
18574 5' -55.4 NC_004682.1 + 37337 0.67 0.599899
Target:  5'- gUACCGGACU-GGCCuugcaccuGGAAuCGcGCCu -3'
miRNA:   3'- aAUGGCCUGAgCUGGu-------CCUU-GCuCGG- -5'
18574 5' -55.4 NC_004682.1 + 24537 0.69 0.502897
Target:  5'- aUGCuCGGGgUCGGCCAcugcGGGGCcugugGAGCCu -3'
miRNA:   3'- aAUG-GCCUgAGCUGGU----CCUUG-----CUCGG- -5'
18574 5' -55.4 NC_004682.1 + 43006 0.68 0.552909
Target:  5'- aUGCCGGugUCGACCgccuugcccgacAGGAuguccugguacGCGucccaguccuucucGGCCa -3'
miRNA:   3'- aAUGGCCugAGCUGG------------UCCU-----------UGC--------------UCGG- -5'
18574 5' -55.4 NC_004682.1 + 20938 0.67 0.599899
Target:  5'- -cGCCGGAUcggcgcguUCGGCaggucuggCGGGAGCGGGUg -3'
miRNA:   3'- aaUGGCCUG--------AGCUG--------GUCCUUGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 38778 0.66 0.684797
Target:  5'- -gGuuGGugUCGGCCAGcGAcACGAccuuggucgucucgGCCa -3'
miRNA:   3'- aaUggCCugAGCUGGUC-CU-UGCU--------------CGG- -5'
18574 5' -55.4 NC_004682.1 + 36191 0.68 0.53462
Target:  5'- -gGCCGGugUCGGUCAGGuucagcgucuUGAGCUg -3'
miRNA:   3'- aaUGGCCugAGCUGGUCCuu--------GCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 21667 0.66 0.666141
Target:  5'- -cGCU-GACUaCGACCGGGAuucgcGCGAGUg -3'
miRNA:   3'- aaUGGcCUGA-GCUGGUCCU-----UGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 5120 0.67 0.610925
Target:  5'- -cACCuGGCaggagaucuucgUCGGCgAGGAGgGAGCCg -3'
miRNA:   3'- aaUGGcCUG------------AGCUGgUCCUUgCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 4445 0.69 0.523961
Target:  5'- cUACCGGGg-CGACaAGGAGCGcGCUg -3'
miRNA:   3'- aAUGGCCUgaGCUGgUCCUUGCuCGG- -5'
18574 5' -55.4 NC_004682.1 + 7914 0.69 0.481187
Target:  5'- -gACCGucCUCGACUucaucggGGGGccgGCGGGCCa -3'
miRNA:   3'- aaUGGCcuGAGCUGG-------UCCU---UGCUCGG- -5'
18574 5' -55.4 NC_004682.1 + 418 0.66 0.65512
Target:  5'- --uUCGGGCUUGACagagaaCGGGAAUGGGUg -3'
miRNA:   3'- aauGGCCUGAGCUG------GUCCUUGCUCGg -5'
18574 5' -55.4 NC_004682.1 + 34928 0.67 0.644078
Target:  5'- -gGCuCGGcUUCGACUuGGAAUGuGCCg -3'
miRNA:   3'- aaUG-GCCuGAGCUGGuCCUUGCuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.