Results 1 - 20 of 40 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 30290 | 0.66 | 0.540929 |
Target: 5'- -aGGCCGGguUCAcgaaguaccuucGCCUGCCgauCCaCGACg -3' miRNA: 3'- caCUGGCC--AGU------------UGGGCGGau-GG-GCUG- -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 9175 | 0.66 | 0.537779 |
Target: 5'- -cGACCaaccuguacgcacaGaUCGACCCGCgcACCCGACa -3' miRNA: 3'- caCUGG--------------CcAGUUGGGCGgaUGGGCUG- -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 16877 | 0.66 | 0.536731 |
Target: 5'- uGUGACCaaccaacccauacgGGUCAGgCCGaggaacuUCUugCCGACg -3' miRNA: 3'- -CACUGG--------------CCAGUUgGGC-------GGAugGGCUG- -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 24018 | 0.66 | 0.534636 |
Target: 5'- -gGGCCGGUCGuucaucguccgguuCaCCGaCUACCCGAa -3' miRNA: 3'- caCUGGCCAGUu-------------G-GGCgGAUGGGCUg -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 17892 | 0.66 | 0.520056 |
Target: 5'- aUGACCG---AGCCCGCC-AUCUGACc -3' miRNA: 3'- cACUGGCcagUUGGGCGGaUGGGCUG- -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 46266 | 0.66 | 0.509738 |
Target: 5'- cUGGCCGGU-GACCuCGCCgagaAgCUGACg -3' miRNA: 3'- cACUGGCCAgUUGG-GCGGa---UgGGCUG- -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 5105 | 0.66 | 0.509738 |
Target: 5'- -cGACCcccguGGUCGacGCCgCGCCgauCCUGGCg -3' miRNA: 3'- caCUGG-----CCAGU--UGG-GCGGau-GGGCUG- -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 5270 | 0.66 | 0.499507 |
Target: 5'- -gGugCaGUCGGCCUGCUUcaGCCCGuCa -3' miRNA: 3'- caCugGcCAGUUGGGCGGA--UGGGCuG- -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 50659 | 0.66 | 0.499507 |
Target: 5'- ---cCCGGUaccccaccuGCCCuGCCUACCCGGu -3' miRNA: 3'- cacuGGCCAgu-------UGGG-CGGAUGGGCUg -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 42841 | 0.66 | 0.499507 |
Target: 5'- -aGcCCGGUCuGCCCGCgUGgcacguCCUGACc -3' miRNA: 3'- caCuGGCCAGuUGGGCGgAU------GGGCUG- -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 41528 | 0.66 | 0.499507 |
Target: 5'- aUGGCgCGGUCGACgagCGCCUGCguggUCGGCc -3' miRNA: 3'- cACUG-GCCAGUUGg--GCGGAUG----GGCUG- -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 20987 | 0.66 | 0.489367 |
Target: 5'- uGUGGacgcucCCGGaCAACCCGCUcgACCCcACa -3' miRNA: 3'- -CACU------GGCCaGUUGGGCGGa-UGGGcUG- -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 5832 | 0.66 | 0.489367 |
Target: 5'- -cGACgCGGU-GACCCgcGCCUACCuguuCGACg -3' miRNA: 3'- caCUG-GCCAgUUGGG--CGGAUGG----GCUG- -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 2218 | 0.66 | 0.489367 |
Target: 5'- -gGACCGGUaggucccuGCUCGCCUucggGgCCGGCu -3' miRNA: 3'- caCUGGCCAgu------UGGGCGGA----UgGGCUG- -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 47379 | 0.66 | 0.489367 |
Target: 5'- -cGGCUGGcCAaggACCCGCUaguCCUGGCg -3' miRNA: 3'- caCUGGCCaGU---UGGGCGGau-GGGCUG- -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 30648 | 0.67 | 0.469385 |
Target: 5'- aUGACCGcaCGGgCCGCgugGCCCGACc -3' miRNA: 3'- cACUGGCcaGUUgGGCGga-UGGGCUG- -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 24414 | 0.67 | 0.469385 |
Target: 5'- -cGACCacgCAGCCCaGCuCUGCCCGGa -3' miRNA: 3'- caCUGGccaGUUGGG-CG-GAUGGGCUg -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 49253 | 0.67 | 0.459552 |
Target: 5'- aUGACgCGGUacuCCCGCUcACCCGuCu -3' miRNA: 3'- cACUG-GCCAguuGGGCGGaUGGGCuG- -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 7751 | 0.67 | 0.459552 |
Target: 5'- cGUGACCGucGUUGAUCuCGCC-GCCCGGu -3' miRNA: 3'- -CACUGGC--CAGUUGG-GCGGaUGGGCUg -5' |
|||||||
18647 | 5' | -58.6 | NC_004682.1 | + | 3100 | 0.67 | 0.449829 |
Target: 5'- aGUG-CCGGU-GACCUGCgUugCUGACc -3' miRNA: 3'- -CACuGGCCAgUUGGGCGgAugGGCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home