miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18647 5' -58.6 NC_004682.1 + 30290 0.66 0.540929
Target:  5'- -aGGCCGGguUCAcgaaguaccuucGCCUGCCgauCCaCGACg -3'
miRNA:   3'- caCUGGCC--AGU------------UGGGCGGau-GG-GCUG- -5'
18647 5' -58.6 NC_004682.1 + 9175 0.66 0.537779
Target:  5'- -cGACCaaccuguacgcacaGaUCGACCCGCgcACCCGACa -3'
miRNA:   3'- caCUGG--------------CcAGUUGGGCGgaUGGGCUG- -5'
18647 5' -58.6 NC_004682.1 + 16877 0.66 0.536731
Target:  5'- uGUGACCaaccaacccauacgGGUCAGgCCGaggaacuUCUugCCGACg -3'
miRNA:   3'- -CACUGG--------------CCAGUUgGGC-------GGAugGGCUG- -5'
18647 5' -58.6 NC_004682.1 + 24018 0.66 0.534636
Target:  5'- -gGGCCGGUCGuucaucguccgguuCaCCGaCUACCCGAa -3'
miRNA:   3'- caCUGGCCAGUu-------------G-GGCgGAUGGGCUg -5'
18647 5' -58.6 NC_004682.1 + 17892 0.66 0.520056
Target:  5'- aUGACCG---AGCCCGCC-AUCUGACc -3'
miRNA:   3'- cACUGGCcagUUGGGCGGaUGGGCUG- -5'
18647 5' -58.6 NC_004682.1 + 5105 0.66 0.509738
Target:  5'- -cGACCcccguGGUCGacGCCgCGCCgauCCUGGCg -3'
miRNA:   3'- caCUGG-----CCAGU--UGG-GCGGau-GGGCUG- -5'
18647 5' -58.6 NC_004682.1 + 46266 0.66 0.509738
Target:  5'- cUGGCCGGU-GACCuCGCCgagaAgCUGACg -3'
miRNA:   3'- cACUGGCCAgUUGG-GCGGa---UgGGCUG- -5'
18647 5' -58.6 NC_004682.1 + 50659 0.66 0.499507
Target:  5'- ---cCCGGUaccccaccuGCCCuGCCUACCCGGu -3'
miRNA:   3'- cacuGGCCAgu-------UGGG-CGGAUGGGCUg -5'
18647 5' -58.6 NC_004682.1 + 5270 0.66 0.499507
Target:  5'- -gGugCaGUCGGCCUGCUUcaGCCCGuCa -3'
miRNA:   3'- caCugGcCAGUUGGGCGGA--UGGGCuG- -5'
18647 5' -58.6 NC_004682.1 + 42841 0.66 0.499507
Target:  5'- -aGcCCGGUCuGCCCGCgUGgcacguCCUGACc -3'
miRNA:   3'- caCuGGCCAGuUGGGCGgAU------GGGCUG- -5'
18647 5' -58.6 NC_004682.1 + 41528 0.66 0.499507
Target:  5'- aUGGCgCGGUCGACgagCGCCUGCguggUCGGCc -3'
miRNA:   3'- cACUG-GCCAGUUGg--GCGGAUG----GGCUG- -5'
18647 5' -58.6 NC_004682.1 + 5832 0.66 0.489367
Target:  5'- -cGACgCGGU-GACCCgcGCCUACCuguuCGACg -3'
miRNA:   3'- caCUG-GCCAgUUGGG--CGGAUGG----GCUG- -5'
18647 5' -58.6 NC_004682.1 + 2218 0.66 0.489367
Target:  5'- -gGACCGGUaggucccuGCUCGCCUucggGgCCGGCu -3'
miRNA:   3'- caCUGGCCAgu------UGGGCGGA----UgGGCUG- -5'
18647 5' -58.6 NC_004682.1 + 47379 0.66 0.489367
Target:  5'- -cGGCUGGcCAaggACCCGCUaguCCUGGCg -3'
miRNA:   3'- caCUGGCCaGU---UGGGCGGau-GGGCUG- -5'
18647 5' -58.6 NC_004682.1 + 20987 0.66 0.489367
Target:  5'- uGUGGacgcucCCGGaCAACCCGCUcgACCCcACa -3'
miRNA:   3'- -CACU------GGCCaGUUGGGCGGa-UGGGcUG- -5'
18647 5' -58.6 NC_004682.1 + 30648 0.67 0.469385
Target:  5'- aUGACCGcaCGGgCCGCgugGCCCGACc -3'
miRNA:   3'- cACUGGCcaGUUgGGCGga-UGGGCUG- -5'
18647 5' -58.6 NC_004682.1 + 24414 0.67 0.469385
Target:  5'- -cGACCacgCAGCCCaGCuCUGCCCGGa -3'
miRNA:   3'- caCUGGccaGUUGGG-CG-GAUGGGCUg -5'
18647 5' -58.6 NC_004682.1 + 7751 0.67 0.459552
Target:  5'- cGUGACCGucGUUGAUCuCGCC-GCCCGGu -3'
miRNA:   3'- -CACUGGC--CAGUUGG-GCGGaUGGGCUg -5'
18647 5' -58.6 NC_004682.1 + 49253 0.67 0.459552
Target:  5'- aUGACgCGGUacuCCCGCUcACCCGuCu -3'
miRNA:   3'- cACUG-GCCAguuGGGCGGaUGGGCuG- -5'
18647 5' -58.6 NC_004682.1 + 3100 0.67 0.449829
Target:  5'- aGUG-CCGGU-GACCUGCgUugCUGACc -3'
miRNA:   3'- -CACuGGCCAgUUGGGCGgAugGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.