miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18675 3' -58.3 NC_004682.1 + 17595 0.66 0.500103
Target:  5'- -aGCAcguugccgaucAGGCCcgagAGCGAGGuCAGCgcuGGCAu -3'
miRNA:   3'- agCGU-----------UCCGG----UCGUUCCuGUCG---CCGU- -5'
18675 3' -58.3 NC_004682.1 + 23234 0.66 0.500103
Target:  5'- cCGCGAGaUCcGCAAGGACaucGGUGGCc -3'
miRNA:   3'- aGCGUUCcGGuCGUUCCUG---UCGCCGu -5'
18675 3' -58.3 NC_004682.1 + 48487 0.66 0.500103
Target:  5'- uUCGCAAGGCUucuugucgcuGGCAcGGcaAUGGgGGCGa -3'
miRNA:   3'- -AGCGUUCCGG----------UCGUuCC--UGUCgCCGU- -5'
18675 3' -58.3 NC_004682.1 + 12857 0.66 0.489765
Target:  5'- aUCGCuuggggGAGGCCGGUuucGGGGCgucAGCGcGCu -3'
miRNA:   3'- -AGCG------UUCCGGUCGu--UCCUG---UCGC-CGu -5'
18675 3' -58.3 NC_004682.1 + 35467 0.66 0.489765
Target:  5'- uUCGUcaucGAGGacuCCcGCGAGGGCugGGCGGCu -3'
miRNA:   3'- -AGCG----UUCC---GGuCGUUCCUG--UCGCCGu -5'
18675 3' -58.3 NC_004682.1 + 16922 0.66 0.489765
Target:  5'- gCGCuguGGcGCuCGGCAuGGACgggaucaaGGCGGCAg -3'
miRNA:   3'- aGCGu--UC-CG-GUCGUuCCUG--------UCGCCGU- -5'
18675 3' -58.3 NC_004682.1 + 26305 0.66 0.488737
Target:  5'- cCGCAGuGGCCgaccccgAGCAuuGGGuuGGCGGUg -3'
miRNA:   3'- aGCGUU-CCGG-------UCGU--UCCugUCGCCGu -5'
18675 3' -58.3 NC_004682.1 + 45555 0.66 0.486683
Target:  5'- gCGcCGGGGCCGGCGugagcagcagccccAGcGCGGCGaGCAu -3'
miRNA:   3'- aGC-GUUCCGGUCGU--------------UCcUGUCGC-CGU- -5'
18675 3' -58.3 NC_004682.1 + 2572 0.66 0.479528
Target:  5'- gCcCAAGGCCcGCAGGGcauuCAGgGGCc -3'
miRNA:   3'- aGcGUUCCGGuCGUUCCu---GUCgCCGu -5'
18675 3' -58.3 NC_004682.1 + 25266 0.66 0.479528
Target:  5'- gCGuCAAGGCCcacGGCGuGGccCAGUGGCGc -3'
miRNA:   3'- aGC-GUUCCGG---UCGUuCCu-GUCGCCGU- -5'
18675 3' -58.3 NC_004682.1 + 43352 0.66 0.479528
Target:  5'- cUCGCGGGGCCAcucccccaagucGUAGGGguACGuCGGCu -3'
miRNA:   3'- -AGCGUUCCGGU------------CGUUCC--UGUcGCCGu -5'
18675 3' -58.3 NC_004682.1 + 26758 0.66 0.469397
Target:  5'- -gGCAAGGCgAuCcugGAGGACauGGCGGCGa -3'
miRNA:   3'- agCGUUCCGgUcG---UUCCUG--UCGCCGU- -5'
18675 3' -58.3 NC_004682.1 + 40372 0.66 0.469397
Target:  5'- cUCGCuGGGCCAGCuc-GAuCAGCaGCu -3'
miRNA:   3'- -AGCGuUCCGGUCGuucCU-GUCGcCGu -5'
18675 3' -58.3 NC_004682.1 + 18119 0.66 0.459376
Target:  5'- gCGCAGGGC--GCGucGGACAucGCGGCc -3'
miRNA:   3'- aGCGUUCCGguCGUu-CCUGU--CGCCGu -5'
18675 3' -58.3 NC_004682.1 + 9845 0.68 0.383644
Target:  5'- gCGCGuGGCCuaCAAGGucaugaACGGCGGCGa -3'
miRNA:   3'- aGCGUuCCGGucGUUCC------UGUCGCCGU- -5'
18675 3' -58.3 NC_004682.1 + 1877 0.68 0.383644
Target:  5'- cCGCAAGGCCcugcgGGCGAGGgacuccacaucgACGGCcaGGUg -3'
miRNA:   3'- aGCGUUCCGG-----UCGUUCC------------UGUCG--CCGu -5'
18675 3' -58.3 NC_004682.1 + 6986 0.68 0.382751
Target:  5'- aUCGcCAGGGCCAuuGCGAugcccucGGugAGCGGaCGc -3'
miRNA:   3'- -AGC-GUUCCGGU--CGUU-------CCugUCGCC-GU- -5'
18675 3' -58.3 NC_004682.1 + 455 0.68 0.373018
Target:  5'- cUC-CAGGGCCGGUAuccagcggccuccAGGGCcgcuuccGGCGGCGc -3'
miRNA:   3'- -AGcGUUCCGGUCGU-------------UCCUG-------UCGCCGU- -5'
18675 3' -58.3 NC_004682.1 + 47274 0.68 0.369521
Target:  5'- -gGCAAgccucggaucuccucGGCCAGCGccAGGACuAGCGGg- -3'
miRNA:   3'- agCGUU---------------CCGGUCGU--UCCUG-UCGCCgu -5'
18675 3' -58.3 NC_004682.1 + 27532 0.69 0.340711
Target:  5'- gUCGCGAGGUCcGCGAGGGCcGUGa-- -3'
miRNA:   3'- -AGCGUUCCGGuCGUUCCUGuCGCcgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.