miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18731 3' -59.6 NC_004682.1 + 16637 0.66 0.502478
Target:  5'- -aCGGCUuCCGCaaguuccagcagGCGCUGCGCGGc-- -3'
miRNA:   3'- cgGCCGGuGGUG------------CGUGACGCGCUacc -5'
18731 3' -59.6 NC_004682.1 + 5447 0.66 0.502478
Target:  5'- cGCUGGCCgaucugaaguggGCCG-GCAUcgGCGCGGccUGGu -3'
miRNA:   3'- -CGGCCGG------------UGGUgCGUGa-CGCGCU--ACC- -5'
18731 3' -59.6 NC_004682.1 + 9438 0.66 0.492437
Target:  5'- cGCuCGGUCACCgACGCAgCUGCcCGGa-- -3'
miRNA:   3'- -CG-GCCGGUGG-UGCGU-GACGcGCUacc -5'
18731 3' -59.6 NC_004682.1 + 16911 0.66 0.482489
Target:  5'- uGCCGGUguCgGCGCugUGgCGCucggcAUGGa -3'
miRNA:   3'- -CGGCCGguGgUGCGugAC-GCGc----UACC- -5'
18731 3' -59.6 NC_004682.1 + 1978 0.66 0.482489
Target:  5'- aGUCGGCCACCugGC-C-GuCGauGUGGa -3'
miRNA:   3'- -CGGCCGGUGGugCGuGaC-GCgcUACC- -5'
18731 3' -59.6 NC_004682.1 + 47378 0.66 0.481499
Target:  5'- gGCUGGCCAaggacccgcuaguCCugGCGCUG-GcCGA-GGa -3'
miRNA:   3'- -CGGCCGGU-------------GGugCGUGACgC-GCUaCC- -5'
18731 3' -59.6 NC_004682.1 + 15064 0.66 0.472639
Target:  5'- cCCGGCgCACCgACGCcUUGUGgGcGUGGa -3'
miRNA:   3'- cGGCCG-GUGG-UGCGuGACGCgC-UACC- -5'
18731 3' -59.6 NC_004682.1 + 23255 0.66 0.472639
Target:  5'- cGgUGGCCugCGCGaggaGCUGCG-GAcGGa -3'
miRNA:   3'- -CgGCCGGugGUGCg---UGACGCgCUaCC- -5'
18731 3' -59.6 NC_004682.1 + 17303 0.67 0.44372
Target:  5'- aGCUGGCCAgggUCAgGaacgACUGCGUGAacUGGu -3'
miRNA:   3'- -CGGCCGGU---GGUgCg---UGACGCGCU--ACC- -5'
18731 3' -59.6 NC_004682.1 + 5121 0.67 0.44372
Target:  5'- cGCCGcGCCGauCCugGCGCgUGCuGCGGg-- -3'
miRNA:   3'- -CGGC-CGGU--GGugCGUG-ACG-CGCUacc -5'
18731 3' -59.6 NC_004682.1 + 19965 0.67 0.442773
Target:  5'- -gCGGCCAUCgcccgcaACGCgACUGCcGCGAcGGu -3'
miRNA:   3'- cgGCCGGUGG-------UGCG-UGACG-CGCUaCC- -5'
18731 3' -59.6 NC_004682.1 + 17798 0.67 0.434303
Target:  5'- cCCGGCCcUCGC-CAC--CGCGAUGGg -3'
miRNA:   3'- cGGCCGGuGGUGcGUGacGCGCUACC- -5'
18731 3' -59.6 NC_004682.1 + 10624 0.67 0.42778
Target:  5'- uGUCGGCguCCugccaucucgacuucGCGCACUgcucguaGCGCGAccUGGg -3'
miRNA:   3'- -CGGCCGguGG---------------UGCGUGA-------CGCGCU--ACC- -5'
18731 3' -59.6 NC_004682.1 + 43811 0.67 0.425003
Target:  5'- gGUCgGGCCGCUACG-ACgGCGCGAg-- -3'
miRNA:   3'- -CGG-CCGGUGGUGCgUGaCGCGCUacc -5'
18731 3' -59.6 NC_004682.1 + 15879 0.67 0.415822
Target:  5'- uGCUuGCCGCCGCGCuucuCUGCGUaGAa-- -3'
miRNA:   3'- -CGGcCGGUGGUGCGu---GACGCG-CUacc -5'
18731 3' -59.6 NC_004682.1 + 14287 0.67 0.406765
Target:  5'- uGCCGGUgAucgagaugaCCGCGUACggGCGUGA-GGg -3'
miRNA:   3'- -CGGCCGgU---------GGUGCGUGa-CGCGCUaCC- -5'
18731 3' -59.6 NC_004682.1 + 22628 0.67 0.406765
Target:  5'- gGCCGGCguguccuucgaCACCcaACGCGCUGCGUu---- -3'
miRNA:   3'- -CGGCCG-----------GUGG--UGCGUGACGCGcuacc -5'
18731 3' -59.6 NC_004682.1 + 18201 0.67 0.397832
Target:  5'- aCCGGCaacCACCGCGCAUgGCGCu---- -3'
miRNA:   3'- cGGCCG---GUGGUGCGUGaCGCGcuacc -5'
18731 3' -59.6 NC_004682.1 + 32621 0.68 0.389026
Target:  5'- aGCgGGCCuugAUgACGUAgcgccaUGCGCGGUGGu -3'
miRNA:   3'- -CGgCCGG---UGgUGCGUg-----ACGCGCUACC- -5'
18731 3' -59.6 NC_004682.1 + 28490 0.68 0.389026
Target:  5'- aUgGGUCACCGCGCcgacacCUGCGaaGGUGGg -3'
miRNA:   3'- cGgCCGGUGGUGCGu-----GACGCg-CUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.