Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18748 | 5' | -57.4 | NC_004682.1 | + | 32578 | 0.66 | 0.610061 |
Target: 5'- cUGCGcGgCACCGaCAGCcagGUCgauacCGGCCu -3' miRNA: 3'- -ACGCuUgGUGGCaGUCG---CAGa----GCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 23511 | 0.66 | 0.620889 |
Target: 5'- cUGCGAagACaguCUGUC-GCaacuguacuuGUCUCGGCCa -3' miRNA: 3'- -ACGCU--UGgu-GGCAGuCG----------CAGAGCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 12958 | 0.66 | 0.61439 |
Target: 5'- cGCGGA-CAUCG-CGGCGcguucucgggguacCUCGGCCa -3' miRNA: 3'- aCGCUUgGUGGCaGUCGCa-------------GAGCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 38879 | 0.66 | 0.610061 |
Target: 5'- aGCGcGAUgGCC-UCGGCGaUCUUGGUCc -3' miRNA: 3'- aCGC-UUGgUGGcAGUCGC-AGAGCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 6834 | 0.66 | 0.610061 |
Target: 5'- cGCGuAAgCACCG-CAGCGugUCUCaGCUc -3' miRNA: 3'- aCGC-UUgGUGGCaGUCGC--AGAGcCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 40908 | 0.66 | 0.599251 |
Target: 5'- cUGCGucuGCCuggcggcguaCGUCGGCGUCgacggaUCGcGCCa -3' miRNA: 3'- -ACGCu--UGGug--------GCAGUCGCAG------AGC-CGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 26630 | 0.66 | 0.599251 |
Target: 5'- gGCGAcgguGCCcgagauGCUcugguagucgGUCAGCGUCUC-GCCa -3' miRNA: 3'- aCGCU----UGG------UGG----------CAGUCGCAGAGcCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 9457 | 0.66 | 0.588468 |
Target: 5'- gGCGAucCCGCUGUcCGGUGUCaagGGUCa -3' miRNA: 3'- aCGCUu-GGUGGCA-GUCGCAGag-CCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 45776 | 0.66 | 0.588468 |
Target: 5'- aGcCGGugCGgCGUCGGCGUacgcguagcccUUCGGCg -3' miRNA: 3'- aC-GCUugGUgGCAGUCGCA-----------GAGCCGg -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 30227 | 0.66 | 0.599251 |
Target: 5'- cGUGAACCcggccucaugcaGCCGgaUCAGCGcCUcccCGGUCa -3' miRNA: 3'- aCGCUUGG------------UGGC--AGUCGCaGA---GCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 25870 | 0.66 | 0.598171 |
Target: 5'- gGCcuugguCCACuCGUCGGCGUUggucuugUCGGUCu -3' miRNA: 3'- aCGcuu---GGUG-GCAGUCGCAG-------AGCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 33483 | 0.66 | 0.588468 |
Target: 5'- cGCcguuGCCGCCGcCAGCGgccugcugCggGGCCa -3' miRNA: 3'- aCGcu--UGGUGGCaGUCGCa-------GagCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 29502 | 0.66 | 0.588468 |
Target: 5'- aGCcagGAGCCGCCGaaGGCGgUCUCacuGCCc -3' miRNA: 3'- aCG---CUUGGUGGCagUCGC-AGAGc--CGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 26334 | 0.66 | 0.567017 |
Target: 5'- gGCGGuguacgucuucgACCGCCuguuccccuGUCGGCG-CgcagCGGCCu -3' miRNA: 3'- aCGCU------------UGGUGG---------CAGUCGCaGa---GCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 36365 | 0.66 | 0.567017 |
Target: 5'- cUGCGGACCcgguucaucUCGUCGGUGagggcCUCGGUCc -3' miRNA: 3'- -ACGCUUGGu--------GGCAGUCGCa----GAGCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 6155 | 0.66 | 0.577721 |
Target: 5'- gGCGGGCCGCUGcgagucgaCGGCuaUUUCGGCUa -3' miRNA: 3'- aCGCUUGGUGGCa-------GUCGc-AGAGCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 10233 | 0.66 | 0.577721 |
Target: 5'- cGCGcucGCCAacuaCGUCAuGCGUUg-GGCCa -3' miRNA: 3'- aCGCu--UGGUg---GCAGU-CGCAGagCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 2053 | 0.66 | 0.588468 |
Target: 5'- cGCGGACUgACUGguccgCAGgGUCcgacCGGCCc -3' miRNA: 3'- aCGCUUGG-UGGCa----GUCgCAGa---GCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 8861 | 0.66 | 0.588468 |
Target: 5'- aGCGccGGCCcgacGCCGUaGGCGUCaCGGUCc -3' miRNA: 3'- aCGC--UUGG----UGGCAgUCGCAGaGCCGG- -5' |
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18748 | 5' | -57.4 | NC_004682.1 | + | 46325 | 0.66 | 0.577721 |
Target: 5'- cUGCGGucguagggaaguACCuucuCCGUCAucGCGUCa-GGCCc -3' miRNA: 3'- -ACGCU------------UGGu---GGCAGU--CGCAGagCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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