miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18748 5' -57.4 NC_004682.1 + 49577 1.11 0.00047
Target:  5'- uUGCGAACCACCGUCAGCGUCUCGGCCc -3'
miRNA:   3'- -ACGCUUGGUGGCAGUCGCAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 48833 0.67 0.51441
Target:  5'- --gGGugCGCCGUCGGCcUCggggGGCCa -3'
miRNA:   3'- acgCUugGUGGCAGUCGcAGag--CCGG- -5'
18748 5' -57.4 NC_004682.1 + 47349 0.66 0.567017
Target:  5'- gGCGGGggguUCACCGUCcGC-UCcCGGCCc -3'
miRNA:   3'- aCGCUU----GGUGGCAGuCGcAGaGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 47163 0.7 0.371441
Target:  5'- gGCGGucaGCuCGCCuUCGGUGUaCUCGGUCa -3'
miRNA:   3'- aCGCU---UG-GUGGcAGUCGCA-GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 47126 0.68 0.483808
Target:  5'- cGCGAccguauUCGCCGUCAGCGacgaCUCccGCCg -3'
miRNA:   3'- aCGCUu-----GGUGGCAGUCGCa---GAGc-CGG- -5'
18748 5' -57.4 NC_004682.1 + 46325 0.66 0.577721
Target:  5'- cUGCGGucguagggaaguACCuucuCCGUCAucGCGUCa-GGCCc -3'
miRNA:   3'- -ACGCU------------UGGu---GGCAGU--CGCAGagCCGG- -5'
18748 5' -57.4 NC_004682.1 + 46179 0.69 0.397844
Target:  5'- -uCGAugCA-CGUCAGCuUCUCGGCg -3'
miRNA:   3'- acGCUugGUgGCAGUCGcAGAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 45776 0.66 0.588468
Target:  5'- aGcCGGugCGgCGUCGGCGUacgcguagcccUUCGGCg -3'
miRNA:   3'- aC-GCUugGUgGCAGUCGCA-----------GAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 45468 0.68 0.483808
Target:  5'- gUGCGAcguGCCaugcGCUGUCGGCGUUgauGCCu -3'
miRNA:   3'- -ACGCU---UGG----UGGCAGUCGCAGagcCGG- -5'
18748 5' -57.4 NC_004682.1 + 44699 0.72 0.264626
Target:  5'- aGCGGcCCGCCGUCguacgccuuGGCGUa--GGCCg -3'
miRNA:   3'- aCGCUuGGUGGCAG---------UCGCAgagCCGG- -5'
18748 5' -57.4 NC_004682.1 + 43436 0.7 0.371441
Target:  5'- cUGCGGggGCUcgauGCCG-UAG-GUCUCGGCCa -3'
miRNA:   3'- -ACGCU--UGG----UGGCaGUCgCAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 42490 0.67 0.504118
Target:  5'- cUGCG-GCCACC-UCAGCGUCgaacagaCGGaUCa -3'
miRNA:   3'- -ACGCuUGGUGGcAGUCGCAGa------GCC-GG- -5'
18748 5' -57.4 NC_004682.1 + 41396 0.67 0.545772
Target:  5'- aGCgGGAUCGCCuuGUCGGCGUCgUUGuaGCCu -3'
miRNA:   3'- aCG-CUUGGUGG--CAGUCGCAG-AGC--CGG- -5'
18748 5' -57.4 NC_004682.1 + 41266 0.75 0.189061
Target:  5'- aUGCGAGCCagguACgCGUCgaacAGCGUCU-GGCCg -3'
miRNA:   3'- -ACGCUUGG----UG-GCAG----UCGCAGAgCCGG- -5'
18748 5' -57.4 NC_004682.1 + 40983 0.67 0.556365
Target:  5'- uUGCGAGCCAgCGgccUGGCcagCUCGGUg -3'
miRNA:   3'- -ACGCUUGGUgGCa--GUCGca-GAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 40908 0.66 0.599251
Target:  5'- cUGCGucuGCCuggcggcguaCGUCGGCGUCgacggaUCGcGCCa -3'
miRNA:   3'- -ACGCu--UGGug--------GCAGUCGCAG------AGC-CGG- -5'
18748 5' -57.4 NC_004682.1 + 40259 0.66 0.567017
Target:  5'- aGCGGggucgucuuugACCGCCccgaugaucuGUCGGCGUC-CuGCCa -3'
miRNA:   3'- aCGCU-----------UGGUGG----------CAGUCGCAGaGcCGG- -5'
18748 5' -57.4 NC_004682.1 + 39679 0.69 0.406909
Target:  5'- gGUGAACaACUGcggCAGCGUCaucCGGCCc -3'
miRNA:   3'- aCGCUUGgUGGCa--GUCGCAGa--GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 39309 0.69 0.416102
Target:  5'- aGCGggUUGCCGuUCAGCGggaggUGGCUg -3'
miRNA:   3'- aCGCuuGGUGGC-AGUCGCaga--GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 38879 0.66 0.610061
Target:  5'- aGCGcGAUgGCC-UCGGCGaUCUUGGUCc -3'
miRNA:   3'- aCGC-UUGgUGGcAGUCGC-AGAGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.