miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18748 5' -57.4 NC_004682.1 + 23511 0.66 0.620889
Target:  5'- cUGCGAagACaguCUGUC-GCaacuguacuuGUCUCGGCCa -3'
miRNA:   3'- -ACGCU--UGgu-GGCAGuCG----------CAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 6113 0.67 0.535243
Target:  5'- cGUG-GCCACCGgCGGCG--UCGGCa -3'
miRNA:   3'- aCGCuUGGUGGCaGUCGCagAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 25735 0.67 0.51441
Target:  5'- -cUGGACCACaaCGUC--CGUCUCGGUCa -3'
miRNA:   3'- acGCUUGGUG--GCAGucGCAGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 25834 0.77 0.136834
Target:  5'- aUGCGAgcagauGCCGCCGagUCGGCGUCguaccCGGCUu -3'
miRNA:   3'- -ACGCU------UGGUGGC--AGUCGCAGa----GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 32578 0.66 0.610061
Target:  5'- cUGCGcGgCACCGaCAGCcagGUCgauacCGGCCu -3'
miRNA:   3'- -ACGCuUgGUGGCaGUCG---CAGa----GCCGG- -5'
18748 5' -57.4 NC_004682.1 + 40908 0.66 0.599251
Target:  5'- cUGCGucuGCCuggcggcguaCGUCGGCGUCgacggaUCGcGCCa -3'
miRNA:   3'- -ACGCu--UGGug--------GCAGUCGCAG------AGC-CGG- -5'
18748 5' -57.4 NC_004682.1 + 9457 0.66 0.588468
Target:  5'- gGCGAucCCGCUGUcCGGUGUCaagGGUCa -3'
miRNA:   3'- aCGCUu-GGUGGCA-GUCGCAGag-CCGG- -5'
18748 5' -57.4 NC_004682.1 + 45776 0.66 0.588468
Target:  5'- aGcCGGugCGgCGUCGGCGUacgcguagcccUUCGGCg -3'
miRNA:   3'- aC-GCUugGUgGCAGUCGCA-----------GAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 47349 0.66 0.567017
Target:  5'- gGCGGGggguUCACCGUCcGC-UCcCGGCCc -3'
miRNA:   3'- aCGCUU----GGUGGCAGuCGcAGaGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 16228 0.67 0.535243
Target:  5'- cGUGGGCCACC-UCGGCGU---GGCg -3'
miRNA:   3'- aCGCUUGGUGGcAGUCGCAgagCCGg -5'
18748 5' -57.4 NC_004682.1 + 25976 0.67 0.56062
Target:  5'- cGCGAACgggaCACCGUUcuuguagagcaucggAGCGgUCUUccaGGCCg -3'
miRNA:   3'- aCGCUUG----GUGGCAG---------------UCGC-AGAG---CCGG- -5'
18748 5' -57.4 NC_004682.1 + 46325 0.66 0.577721
Target:  5'- cUGCGGucguagggaaguACCuucuCCGUCAucGCGUCa-GGCCc -3'
miRNA:   3'- -ACGCU------------UGGu---GGCAGU--CGCAGagCCGG- -5'
18748 5' -57.4 NC_004682.1 + 12958 0.66 0.61439
Target:  5'- cGCGGA-CAUCG-CGGCGcguucucgggguacCUCGGCCa -3'
miRNA:   3'- aCGCUUgGUGGCaGUCGCa-------------GAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 35546 0.67 0.545772
Target:  5'- cGCGAACuCGCgGUCGGCcUCUUcGCg -3'
miRNA:   3'- aCGCUUG-GUGgCAGUCGcAGAGcCGg -5'
18748 5' -57.4 NC_004682.1 + 38879 0.66 0.610061
Target:  5'- aGCGcGAUgGCC-UCGGCGaUCUUGGUCc -3'
miRNA:   3'- aCGC-UUGgUGGcAGUCGC-AGAGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 29502 0.66 0.588468
Target:  5'- aGCcagGAGCCGCCGaaGGCGgUCUCacuGCCc -3'
miRNA:   3'- aCG---CUUGGUGGCagUCGC-AGAGc--CGG- -5'
18748 5' -57.4 NC_004682.1 + 12801 0.67 0.535243
Target:  5'- -cUGAACgCGCUGUCGGCGcugaggcacCUCGGCa -3'
miRNA:   3'- acGCUUG-GUGGCAGUCGCa--------GAGCCGg -5'
18748 5' -57.4 NC_004682.1 + 20484 0.67 0.534194
Target:  5'- gGCGAGCCAgaacgggcacaUCGUCaccccgaAGgGUCgUCGGCUg -3'
miRNA:   3'- aCGCUUGGU-----------GGCAG-------UCgCAG-AGCCGG- -5'
18748 5' -57.4 NC_004682.1 + 6834 0.66 0.610061
Target:  5'- cGCGuAAgCACCG-CAGCGugUCUCaGCUc -3'
miRNA:   3'- aCGC-UUgGUGGCaGUCGC--AGAGcCGG- -5'
18748 5' -57.4 NC_004682.1 + 26630 0.66 0.599251
Target:  5'- gGCGAcgguGCCcgagauGCUcugguagucgGUCAGCGUCUC-GCCa -3'
miRNA:   3'- aCGCU----UGG------UGG----------CAGUCGCAGAGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.