Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18753 | 3' | -59.6 | NC_004683.1 | + | 51680 | 0.69 | 0.375653 |
Target: 5'- aUCGC-GUCGAGCUCGGCcuGGcgacGGUCGAg -3' miRNA: 3'- gAGCGcCGGCUUGAGCCG--CC----CUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 44637 | 0.69 | 0.375653 |
Target: 5'- -aCGcCGGCCGAA-UCGGCGaGGAacUUGAa -3' miRNA: 3'- gaGC-GCCGGCUUgAGCCGC-CCU--AGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 54461 | 0.68 | 0.392782 |
Target: 5'- gUUGCGGCCGGGCaUGcGuuGGGUCGGg -3' miRNA: 3'- gAGCGCCGGCUUGaGC-CgcCCUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 27757 | 0.68 | 0.401535 |
Target: 5'- --aGUGGCCGAGCUCG-UGGGcgCa- -3' miRNA: 3'- gagCGCCGGCUUGAGCcGCCCuaGcu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 13111 | 0.68 | 0.410411 |
Target: 5'- -aCGCGGCgGcugcccggaggGGCaUCGGCGGGAcCGGu -3' miRNA: 3'- gaGCGCCGgC-----------UUG-AGCCGCCCUaGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 51600 | 0.68 | 0.410411 |
Target: 5'- gUCGCcaGGCCGAGCUCGaCGcGAUCa- -3' miRNA: 3'- gAGCG--CCGGCUUGAGCcGCcCUAGcu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 10753 | 0.68 | 0.418503 |
Target: 5'- -aCGCGG-CGAACgaguucgUCGGCGGGuUCGc -3' miRNA: 3'- gaGCGCCgGCUUG-------AGCCGCCCuAGCu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 23252 | 0.68 | 0.418503 |
Target: 5'- aCUgGUGGCgGggUcgguggaUCGGUGGGGUCa- -3' miRNA: 3'- -GAgCGCCGgCuuG-------AGCCGCCCUAGcu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 27313 | 0.68 | 0.419408 |
Target: 5'- -cCGCaGGaUCGAaucGCUCGGCGGcAUCGAg -3' miRNA: 3'- gaGCG-CC-GGCU---UGAGCCGCCcUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 4036 | 0.68 | 0.428523 |
Target: 5'- -gUGCGcGCCGccCUCGGgugcgagcaCGGGGUCGAc -3' miRNA: 3'- gaGCGC-CGGCuuGAGCC---------GCCCUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 54050 | 0.67 | 0.456553 |
Target: 5'- -cCGCGG-UGAGCUUGGCGacGUCGAa -3' miRNA: 3'- gaGCGCCgGCUUGAGCCGCccUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 301 | 0.67 | 0.456553 |
Target: 5'- aUCGCGGC---GCUCGGaguGGGAUCc- -3' miRNA: 3'- gAGCGCCGgcuUGAGCCg--CCCUAGcu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 33350 | 0.67 | 0.456553 |
Target: 5'- gUCGCgGGCCucuuuCUCGGUGGGGUa-- -3' miRNA: 3'- gAGCG-CCGGcuu--GAGCCGCCCUAgcu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 47377 | 0.67 | 0.475776 |
Target: 5'- aUCGCGGgCuGGCUCGGCaGcgugaGAUCGAa -3' miRNA: 3'- gAGCGCCgGcUUGAGCCGcC-----CUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 3107 | 0.67 | 0.485538 |
Target: 5'- -cCGCGGCCGGG-UCGGCcaucGGGUUGu -3' miRNA: 3'- gaGCGCCGGCUUgAGCCGc---CCUAGCu -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 41281 | 0.66 | 0.494405 |
Target: 5'- cCUCgGCGGCCuucgccGCgUCGGCGGGuguccauAUCGGa -3' miRNA: 3'- -GAG-CGCCGGcu----UG-AGCCGCCC-------UAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 40479 | 0.66 | 0.50534 |
Target: 5'- -gCGCGGCagguCGAGCUCGuCGaGGUCGAg -3' miRNA: 3'- gaGCGCCG----GCUUGAGCcGCcCUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 29344 | 0.66 | 0.50534 |
Target: 5'- gUCGgGGUcuCGGAUUgGGCGGuGUCGAa -3' miRNA: 3'- gAGCgCCG--GCUUGAgCCGCCcUAGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 54236 | 0.66 | 0.511349 |
Target: 5'- -gCGCGGCCGuugaccuuuggccGCUCGGCGucGAuaUCGAu -3' miRNA: 3'- gaGCGCCGGCu------------UGAGCCGCc-CU--AGCU- -5' |
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18753 | 3' | -59.6 | NC_004683.1 | + | 33278 | 0.66 | 0.515371 |
Target: 5'- uUCGCGGaCGGugcGCUgGGUGGGAUg-- -3' miRNA: 3'- gAGCGCCgGCU---UGAgCCGCCCUAgcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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