miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18756 3' -60.9 NC_004683.1 + 31314 0.66 0.430459
Target:  5'- --gCCGUgGCGguGGCGgcgaUGUCGCCGu -3'
miRNA:   3'- aagGGCAgCGCguUCGCg---ACGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 13076 0.66 0.421193
Target:  5'- -gCCCGgcaggaagcCGCGCucGCGCaGCCACuCGu -3'
miRNA:   3'- aaGGGCa--------GCGCGuuCGCGaCGGUG-GC- -5'
18756 3' -60.9 NC_004683.1 + 53 0.66 0.421193
Target:  5'- gUUCCGUgaCGCGCucauGUGUUGUCugCGg -3'
miRNA:   3'- aAGGGCA--GCGCGuu--CGCGACGGugGC- -5'
18756 3' -60.9 NC_004683.1 + 33162 0.66 0.415692
Target:  5'- cUCCCGUccccuaaugggaagcCGCGCAAGC-CUugGUCGCCc -3'
miRNA:   3'- aAGGGCA---------------GCGCGUUCGcGA--CGGUGGc -5'
18756 3' -60.9 NC_004683.1 + 49324 0.66 0.412049
Target:  5'- -cCCCGacugCGCGCuguGCgGCUGCCcgcaccacgacgGCCGg -3'
miRNA:   3'- aaGGGCa---GCGCGuu-CG-CGACGG------------UGGC- -5'
18756 3' -60.9 NC_004683.1 + 56682 0.66 0.412049
Target:  5'- -aCCCGcggccCGCGguGGUGCUGCCuuUGg -3'
miRNA:   3'- aaGGGCa----GCGCguUCGCGACGGugGC- -5'
18756 3' -60.9 NC_004683.1 + 23195 0.66 0.412049
Target:  5'- cUUCUCGaugaGCGCca-CGCUGCCGCUGg -3'
miRNA:   3'- -AAGGGCag--CGCGuucGCGACGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 5652 0.66 0.412049
Target:  5'- --aCCGUCGCGC---UGCUGuUCGCCGa -3'
miRNA:   3'- aagGGCAGCGCGuucGCGAC-GGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 2277 0.66 0.412049
Target:  5'- cUCUCGaCGCG-AGGCGCUGCaCcCCGc -3'
miRNA:   3'- aAGGGCaGCGCgUUCGCGACG-GuGGC- -5'
18756 3' -60.9 NC_004683.1 + 12103 0.66 0.403028
Target:  5'- -gCCC--CGCGCGGGCGCgcugGCCcgcgucgauACCGg -3'
miRNA:   3'- aaGGGcaGCGCGUUCGCGa---CGG---------UGGC- -5'
18756 3' -60.9 NC_004683.1 + 32485 0.66 0.397676
Target:  5'- gUCCCGcacguaugccgggcaUCGUGCAgccggacguGGCGCagaccgGCCGCCu -3'
miRNA:   3'- aAGGGC---------------AGCGCGU---------UCGCGa-----CGGUGGc -5'
18756 3' -60.9 NC_004683.1 + 27543 0.66 0.37673
Target:  5'- cUCCag-CGCGCucgcuGCgGCUGCCugCGg -3'
miRNA:   3'- aAGGgcaGCGCGuu---CG-CGACGGugGC- -5'
18756 3' -60.9 NC_004683.1 + 42707 0.67 0.368225
Target:  5'- aUCUCGUCGCG--GGCGUcgucgcgGUCGCCGa -3'
miRNA:   3'- aAGGGCAGCGCguUCGCGa------CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 26962 0.67 0.368225
Target:  5'- gUCCgcgCGUaCGCGUGAGCGCcgggcaggccgGCCACCu -3'
miRNA:   3'- aAGG---GCA-GCGCGUUCGCGa----------CGGUGGc -5'
18756 3' -60.9 NC_004683.1 + 13246 0.67 0.359852
Target:  5'- -aCCCGUCGacCGCAucGGCGUcGCCGUCGa -3'
miRNA:   3'- aaGGGCAGC--GCGU--UCGCGaCGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 22755 0.67 0.359852
Target:  5'- aUCCUGUUGC-CAAGCGCggUGaUCACCu -3'
miRNA:   3'- aAGGGCAGCGcGUUCGCG--AC-GGUGGc -5'
18756 3' -60.9 NC_004683.1 + 26796 0.67 0.351614
Target:  5'- -cUuuGUCGCGCAGG-GCUauccgcuggcggGCCACCu -3'
miRNA:   3'- aaGggCAGCGCGUUCgCGA------------CGGUGGc -5'
18756 3' -60.9 NC_004683.1 + 1458 0.67 0.335541
Target:  5'- -gCuuGUCGUGCcagccgAGGCGCUcGCgGCCGa -3'
miRNA:   3'- aaGggCAGCGCG------UUCGCGA-CGgUGGC- -5'
18756 3' -60.9 NC_004683.1 + 46120 0.67 0.327709
Target:  5'- gUCCCacaucGUgGCGCGGGacCGCUcgGCCGCCGc -3'
miRNA:   3'- aAGGG-----CAgCGCGUUC--GCGA--CGGUGGC- -5'
18756 3' -60.9 NC_004683.1 + 45550 0.68 0.320012
Target:  5'- -gCgCGUCGCGCGcgagaAGUGCUGCgGCgGu -3'
miRNA:   3'- aaGgGCAGCGCGU-----UCGCGACGgUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.