miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18757 3' -56.5 NC_004683.1 + 46089 0.68 0.527958
Target:  5'- gCCGcGUCGGGCaGCAcUCGC-CGAACa -3'
miRNA:   3'- gGGU-UAGCCCGgCGUaGGCGuGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 15240 0.71 0.400709
Target:  5'- uCCUGAUCGccgauGuuGCGgaUCCGCACGAACc -3'
miRNA:   3'- -GGGUUAGCc----CggCGU--AGGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 24417 0.67 0.634909
Target:  5'- aCgAGUCGGcGuuGCAUCuCGCGggUGAACu -3'
miRNA:   3'- gGgUUAGCC-CggCGUAG-GCGU--GCUUG- -5'
18757 3' -56.5 NC_004683.1 + 49289 0.67 0.580928
Target:  5'- gCCGAUCGGGauagggCGCGgguuagCCaGCACGAGg -3'
miRNA:   3'- gGGUUAGCCCg-----GCGUa-----GG-CGUGCUUg -5'
18757 3' -56.5 NC_004683.1 + 12048 0.71 0.36564
Target:  5'- cCCCGGUgUGGGCagcgGCGguagccCCGCGCGGGCg -3'
miRNA:   3'- -GGGUUA-GCCCGg---CGUa-----GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 44933 0.67 0.634909
Target:  5'- cUCCAGgcCGGGCCaccacgGCGaUUGCGCGAGCu -3'
miRNA:   3'- -GGGUUa-GCCCGG------CGUaGGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 29723 0.73 0.273634
Target:  5'- gCCAuuGUCGGGCuCGUAUCCGU-CGAAg -3'
miRNA:   3'- gGGU--UAGCCCG-GCGUAGGCGuGCUUg -5'
18757 3' -56.5 NC_004683.1 + 45565 0.74 0.25374
Target:  5'- gCCGGUCGGuGCggggCGCGUCgCGCGCGAGa -3'
miRNA:   3'- gGGUUAGCC-CG----GCGUAG-GCGUGCUUg -5'
18757 3' -56.5 NC_004683.1 + 20134 0.67 0.591675
Target:  5'- aCCUcGUCGGGCC-CAaCCGCGCc--- -3'
miRNA:   3'- -GGGuUAGCCCGGcGUaGGCGUGcuug -5'
18757 3' -56.5 NC_004683.1 + 36016 0.66 0.645734
Target:  5'- -aCGAUCGcGGCCcCuuGUCCGCuuGAACa -3'
miRNA:   3'- ggGUUAGC-CCGGcG--UAGGCGugCUUG- -5'
18757 3' -56.5 NC_004683.1 + 49090 0.69 0.46696
Target:  5'- uCCCGGUCGGGCUugagggcgGCGggaUCGCgGCGGGCc -3'
miRNA:   3'- -GGGUUAGCCCGG--------CGUa--GGCG-UGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 1183 0.7 0.419029
Target:  5'- aCCUcggAGUCGGcGUgGCAUCCG-ACGAGCc -3'
miRNA:   3'- -GGG---UUAGCC-CGgCGUAGGCgUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 51930 0.67 0.61326
Target:  5'- gCUCGAgCGcGGUCgGCcgCCGUGCGAACa -3'
miRNA:   3'- -GGGUUaGC-CCGG-CGuaGGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 10876 0.67 0.634909
Target:  5'- uCCCGcugAUCcGaGCCGCAgaaGCGCGGACg -3'
miRNA:   3'- -GGGU---UAGcC-CGGCGUaggCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 4891 0.68 0.558502
Target:  5'- gCCGAaCuGGcCCGCGUCCGaucgacuCACGAGCa -3'
miRNA:   3'- gGGUUaGcCC-GGCGUAGGC-------GUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 56608 0.68 0.535278
Target:  5'- aCCAccgCGGGCCGCGgguacgacUaccagcacaagaagCUGCGCGAACa -3'
miRNA:   3'- gGGUua-GCCCGGCGU--------A--------------GGCGUGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 17323 0.66 0.645734
Target:  5'- cCCCGuaCGGcCCGUAUgCGUugGGGCg -3'
miRNA:   3'- -GGGUuaGCCcGGCGUAgGCGugCUUG- -5'
18757 3' -56.5 NC_004683.1 + 8390 0.72 0.360566
Target:  5'- cCCCGcgCGGGCCGCgAUCCagcccaccaguaaauGC-CGGAUg -3'
miRNA:   3'- -GGGUuaGCCCGGCG-UAGG---------------CGuGCUUG- -5'
18757 3' -56.5 NC_004683.1 + 17861 0.66 0.645734
Target:  5'- aCCCAAccgggCGGGCCGgGgacgCCGCA-GcGCg -3'
miRNA:   3'- -GGGUUa----GCCCGGCgUa---GGCGUgCuUG- -5'
18757 3' -56.5 NC_004683.1 + 42590 0.66 0.645734
Target:  5'- -gCGGUCgGGGCCGguCGUCCGgCugGggUg -3'
miRNA:   3'- ggGUUAG-CCCGGC--GUAGGC-GugCuuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.