miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18758 5' -54.6 NC_004683.1 + 48584 0.66 0.773498
Target:  5'- -cGGcgagAGCgGACCUgGUGCCcGGCCGAu -3'
miRNA:   3'- cuCCa---UUGgCUGGAaCGCGG-UUGGCU- -5'
18758 5' -54.6 NC_004683.1 + 44860 0.66 0.76332
Target:  5'- -uGGUGGcCCGGCCUgGagGCCGaguGCCGAu -3'
miRNA:   3'- cuCCAUU-GGCUGGAaCg-CGGU---UGGCU- -5'
18758 5' -54.6 NC_004683.1 + 9698 0.66 0.76332
Target:  5'- -cGGUGGCCGACCgugagGCGU--ACCu- -3'
miRNA:   3'- cuCCAUUGGCUGGaa---CGCGguUGGcu -5'
18758 5' -54.6 NC_004683.1 + 51305 0.66 0.76332
Target:  5'- gGAGGgccGCCGAugaaCCUcaaCGCCAGCCGc -3'
miRNA:   3'- -CUCCau-UGGCU----GGAac-GCGGUUGGCu -5'
18758 5' -54.6 NC_004683.1 + 40919 0.66 0.753007
Target:  5'- -cGGau-CCGACCcggGCGCCgAGCUGAc -3'
miRNA:   3'- cuCCauuGGCUGGaa-CGCGG-UUGGCU- -5'
18758 5' -54.6 NC_004683.1 + 56881 0.66 0.753007
Target:  5'- -uGGUGAaggcccCCGACC-UGCGCCGAUg-- -3'
miRNA:   3'- cuCCAUU------GGCUGGaACGCGGUUGgcu -5'
18758 5' -54.6 NC_004683.1 + 18160 0.66 0.753007
Target:  5'- uAGGUGGCCGug---GUGCCcGCCGGg -3'
miRNA:   3'- cUCCAUUGGCuggaaCGCGGuUGGCU- -5'
18758 5' -54.6 NC_004683.1 + 10113 0.66 0.742569
Target:  5'- cGAGGUcg-CGGCCUaccGCGCCAgcaaguacGCCGGc -3'
miRNA:   3'- -CUCCAuugGCUGGAa--CGCGGU--------UGGCU- -5'
18758 5' -54.6 NC_004683.1 + 49429 0.66 0.742569
Target:  5'- aGGGgcACCGGCCgucguggUGCgGgCAGCCGc -3'
miRNA:   3'- cUCCauUGGCUGGa------ACG-CgGUUGGCu -5'
18758 5' -54.6 NC_004683.1 + 41062 0.66 0.732018
Target:  5'- cGGGUAGCagCGGCgaUGCGCgCGGCCa- -3'
miRNA:   3'- cUCCAUUG--GCUGgaACGCG-GUUGGcu -5'
18758 5' -54.6 NC_004683.1 + 425 0.66 0.732018
Target:  5'- cGAGGUcuCCaGCCgcauCGCCAACCGc -3'
miRNA:   3'- -CUCCAuuGGcUGGaac-GCGGUUGGCu -5'
18758 5' -54.6 NC_004683.1 + 14398 0.66 0.732018
Target:  5'- cAGG-AGCUGACCUUgguccugcGCGCCGACaaCGGg -3'
miRNA:   3'- cUCCaUUGGCUGGAA--------CGCGGUUG--GCU- -5'
18758 5' -54.6 NC_004683.1 + 46013 0.67 0.721367
Target:  5'- cGAGGU-GCUGcCCgacGCGgCGGCCGAg -3'
miRNA:   3'- -CUCCAuUGGCuGGaa-CGCgGUUGGCU- -5'
18758 5' -54.6 NC_004683.1 + 6449 0.67 0.721367
Target:  5'- cGAGGUcaauGCCGAgCgucgucGCGCCAGCguCGAg -3'
miRNA:   3'- -CUCCAu---UGGCUgGaa----CGCGGUUG--GCU- -5'
18758 5' -54.6 NC_004683.1 + 14119 0.67 0.721367
Target:  5'- cGGG-AAUCG-CCUUGcCGCCGaggACCGAg -3'
miRNA:   3'- cUCCaUUGGCuGGAAC-GCGGU---UGGCU- -5'
18758 5' -54.6 NC_004683.1 + 6924 0.67 0.710626
Target:  5'- -uGGUAAgCGugcCCUUGCGgCgCGACCGGu -3'
miRNA:   3'- cuCCAUUgGCu--GGAACGC-G-GUUGGCU- -5'
18758 5' -54.6 NC_004683.1 + 12848 0.67 0.699808
Target:  5'- cGGGUAGCCGuagcCCUgcUGCGCguACUGc -3'
miRNA:   3'- cUCCAUUGGCu---GGA--ACGCGguUGGCu -5'
18758 5' -54.6 NC_004683.1 + 49419 0.67 0.677983
Target:  5'- cGAGGgcguucugaUGGCCGACCUgaaaacUGCCGACCu- -3'
miRNA:   3'- -CUCC---------AUUGGCUGGAac----GCGGUUGGcu -5'
18758 5' -54.6 NC_004683.1 + 44111 0.68 0.649361
Target:  5'- cGAGGUGACCGGCgCUgagcCGCUGugggacguguucaccGCCGAc -3'
miRNA:   3'- -CUCCAUUGGCUG-GAac--GCGGU---------------UGGCU- -5'
18758 5' -54.6 NC_004683.1 + 9708 0.68 0.644944
Target:  5'- uGAGGguuCCGcCCUUGCGCaguGGCCa- -3'
miRNA:   3'- -CUCCauuGGCuGGAACGCGg--UUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.