miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18764 3' -66 NC_004683.1 + 6740 0.67 0.226264
Target:  5'- gCGCgCCGCgGCCAGcaCGGCgUcgauggcagccugaGCCUCGGu -3'
miRNA:   3'- -GCG-GGCGgCGGUCa-GCCG-G--------------CGGAGCC- -5'
18764 3' -66 NC_004683.1 + 20620 0.67 0.222469
Target:  5'- cCGCCguUGCCGCCGGU--GCCGCCggugaucgugcCGGa -3'
miRNA:   3'- -GCGG--GCGGCGGUCAgcCGGCGGa----------GCC- -5'
18764 3' -66 NC_004683.1 + 51226 0.69 0.165477
Target:  5'- cCGCCacgugGCCGuCCAGUCGGCCuugcgGCCcuUCGc -3'
miRNA:   3'- -GCGGg----CGGC-GGUCAGCCGG-----CGG--AGCc -5'
18764 3' -66 NC_004683.1 + 2838 0.7 0.142193
Target:  5'- uGgCCGCCGCCgAGcucgccgCGGCCGCCgCGc -3'
miRNA:   3'- gCgGGCGGCGG-UCa------GCCGGCGGaGCc -5'
18764 3' -66 NC_004683.1 + 43011 0.66 0.250785
Target:  5'- uGCCCGUCG-CGGUCGGCUucuCCgaCGGc -3'
miRNA:   3'- gCGGGCGGCgGUCAGCCGGc--GGa-GCC- -5'
18764 3' -66 NC_004683.1 + 4050 0.67 0.239117
Target:  5'- aCGCgCGCUaCCAcGUgCGcGCCGCcCUCGGg -3'
miRNA:   3'- -GCGgGCGGcGGU-CA-GC-CGGCG-GAGCC- -5'
18764 3' -66 NC_004683.1 + 46099 0.68 0.210896
Target:  5'- cCGCUCgGCCGCCGcGUCGGgcagcacUCGCCgaacagaUCGGg -3'
miRNA:   3'- -GCGGG-CGGCGGU-CAGCC-------GGCGG-------AGCC- -5'
18764 3' -66 NC_004683.1 + 51931 0.71 0.121942
Target:  5'- aGCUCGa-GCgCGGUCGGCCGCCgugCGa -3'
miRNA:   3'- gCGGGCggCG-GUCAGCCGGCGGa--GCc -5'
18764 3' -66 NC_004683.1 + 44447 0.67 0.239117
Target:  5'- -uCUCGCCGUCgauguAGUCGGCCGUCggcuugaCGGu -3'
miRNA:   3'- gcGGGCGGCGG-----UCAGCCGGCGGa------GCC- -5'
18764 3' -66 NC_004683.1 + 7476 0.71 0.11256
Target:  5'- gCGCCCgGCCGCCgaauccaGGUCGaG-CGCCUcCGGg -3'
miRNA:   3'- -GCGGG-CGGCGG-------UCAGC-CgGCGGA-GCC- -5'
18764 3' -66 NC_004683.1 + 51782 0.68 0.211927
Target:  5'- -uCCUGCaggGCCuGcUCGGCUGCCUCGa -3'
miRNA:   3'- gcGGGCGg--CGGuC-AGCCGGCGGAGCc -5'
18764 3' -66 NC_004683.1 + 52418 0.67 0.227906
Target:  5'- gCGaguaCCGCCgaacGCCGGaaUCGGCCGuCCUUGa -3'
miRNA:   3'- -GCg---GGCGG----CGGUC--AGCCGGC-GGAGCc -5'
18764 3' -66 NC_004683.1 + 12793 0.68 0.210383
Target:  5'- gCGcCCCGCgCGCCGaggaugccgaggauGcCGuGcCCGCCUCGGa -3'
miRNA:   3'- -GC-GGGCG-GCGGU--------------CaGC-C-GGCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 3553 0.68 0.201322
Target:  5'- aGCCCGCCGUUAuuagcguGUUGaUCGUCUCGGc -3'
miRNA:   3'- gCGGGCGGCGGU-------CAGCcGGCGGAGCC- -5'
18764 3' -66 NC_004683.1 + 40874 0.7 0.142193
Target:  5'- gGCCuCGCCGUCGgcgagcgcGUCGGUCGCggCGGu -3'
miRNA:   3'- gCGG-GCGGCGGU--------CAGCCGGCGgaGCC- -5'
18764 3' -66 NC_004683.1 + 44850 0.7 0.142193
Target:  5'- gGCCCGCCGCCGccgGGUCGUagguuuggauCUCGGc -3'
miRNA:   3'- gCGGGCGGCGGUcagCCGGCG----------GAGCC- -5'
18764 3' -66 NC_004683.1 + 11865 0.66 0.262301
Target:  5'- cCGUCCGaUCGaCgAGUCGGCCaGCCacuccuugaacuuUCGGa -3'
miRNA:   3'- -GCGGGC-GGC-GgUCAGCCGG-CGG-------------AGCC- -5'
18764 3' -66 NC_004683.1 + 52604 0.66 0.256793
Target:  5'- -uCCUugGCCGCCucGUCGGCCGCgaUCGc -3'
miRNA:   3'- gcGGG--CGGCGGu-CAGCCGGCGg-AGCc -5'
18764 3' -66 NC_004683.1 + 328 0.66 0.250785
Target:  5'- aGcCCCGCCGCgGGcagcagCGGCgGCaucgcggcgCUCGGa -3'
miRNA:   3'- gC-GGGCGGCGgUCa-----GCCGgCG---------GAGCC- -5'
18764 3' -66 NC_004683.1 + 27539 0.67 0.244894
Target:  5'- aGCgCGCuCGCUg--CGGCUGCCUgCGGu -3'
miRNA:   3'- gCGgGCG-GCGGucaGCCGGCGGA-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.