miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18767 5' -56.6 NC_004683.1 + 47277 0.66 0.64933
Target:  5'- -gGCCGGugGgGUGA-CCGCGUugccGGCCUg -3'
miRNA:   3'- uaUGGUCugU-CACUgGGUGCG----UCGGG- -5'
18767 5' -56.6 NC_004683.1 + 41019 0.66 0.64933
Target:  5'- -gACCccaaGGGCAGUGACCUcgGCGCcuaccucGCCg -3'
miRNA:   3'- uaUGG----UCUGUCACUGGG--UGCGu------CGGg -5'
18767 5' -56.6 NC_004683.1 + 41060 0.66 0.64933
Target:  5'- gGUAgCAG-CGGcGAUgCGCGCGGCCa -3'
miRNA:   3'- -UAUgGUCuGUCaCUGgGUGCGUCGGg -5'
18767 5' -56.6 NC_004683.1 + 51217 0.66 0.638346
Target:  5'- -gGCCGucCAGUcGGCCU-UGCGGCCCu -3'
miRNA:   3'- uaUGGUcuGUCA-CUGGGuGCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 32697 0.66 0.638346
Target:  5'- --gUCuGGCAGUGgcaGCUCGCGCcggcuGGCCCg -3'
miRNA:   3'- uauGGuCUGUCAC---UGGGUGCG-----UCGGG- -5'
18767 5' -56.6 NC_004683.1 + 52300 0.66 0.638346
Target:  5'- -cGCCgAGGCGGacccGACCgACGaCGGCCUc -3'
miRNA:   3'- uaUGG-UCUGUCa---CUGGgUGC-GUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 56257 0.66 0.638346
Target:  5'- gAUGCgGGugggcGCGGUGGCCaGCGCGGCg- -3'
miRNA:   3'- -UAUGgUC-----UGUCACUGGgUGCGUCGgg -5'
18767 5' -56.6 NC_004683.1 + 48986 0.66 0.627356
Target:  5'- aGUACCgcGGGCccgccGcGAUCCACGCcGCCCu -3'
miRNA:   3'- -UAUGG--UCUGu----CaCUGGGUGCGuCGGG- -5'
18767 5' -56.6 NC_004683.1 + 52698 0.66 0.627356
Target:  5'- aGUGCCGGguACAGcUGuacGCCaagCGCGguGCCCg -3'
miRNA:   3'- -UAUGGUC--UGUC-AC---UGG---GUGCguCGGG- -5'
18767 5' -56.6 NC_004683.1 + 5197 0.66 0.61637
Target:  5'- -gGCC-GACAGc-GCCCgggcACGCAGCUCg -3'
miRNA:   3'- uaUGGuCUGUCacUGGG----UGCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 37696 0.66 0.61637
Target:  5'- gGUGUCAG-CAGUGGCgacaaCCGCGCGcuGCCCc -3'
miRNA:   3'- -UAUGGUCuGUCACUG-----GGUGCGU--CGGG- -5'
18767 5' -56.6 NC_004683.1 + 8469 0.66 0.605398
Target:  5'- -gGCUGGAUcGcGGCCCGCGCggGGCCg -3'
miRNA:   3'- uaUGGUCUGuCaCUGGGUGCG--UCGGg -5'
18767 5' -56.6 NC_004683.1 + 44885 0.66 0.605398
Target:  5'- -gGCCAGGCGcaacuugaacGcGAUCgcgggCACGCGGCCCg -3'
miRNA:   3'- uaUGGUCUGU----------CaCUGG-----GUGCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 20526 0.66 0.594449
Target:  5'- -cGCCGGccaucggcGCGGUGGCCCcUGCAccGCCg -3'
miRNA:   3'- uaUGGUC--------UGUCACUGGGuGCGU--CGGg -5'
18767 5' -56.6 NC_004683.1 + 28761 0.66 0.594449
Target:  5'- uGUGCCAacggcuCAGUGAa--GCGCAGUCCa -3'
miRNA:   3'- -UAUGGUcu----GUCACUgggUGCGUCGGG- -5'
18767 5' -56.6 NC_004683.1 + 44916 0.66 0.594449
Target:  5'- -gGCCGGACgguucaccAGUGGCCaGCGCcuGCCg -3'
miRNA:   3'- uaUGGUCUG--------UCACUGGgUGCGu-CGGg -5'
18767 5' -56.6 NC_004683.1 + 17865 0.67 0.583532
Target:  5'- -aACCGGGCGGgccgggGACgC-CGCAGCgCg -3'
miRNA:   3'- uaUGGUCUGUCa-----CUGgGuGCGUCGgG- -5'
18767 5' -56.6 NC_004683.1 + 56345 0.67 0.583532
Target:  5'- cGUGCUcGACGGgcugcucACCCACGaCAGCaCCa -3'
miRNA:   3'- -UAUGGuCUGUCac-----UGGGUGC-GUCG-GG- -5'
18767 5' -56.6 NC_004683.1 + 48333 0.67 0.577001
Target:  5'- -aACCAGA-AGUGGgccgacguccgcaucCCCGCGCuGCUCg -3'
miRNA:   3'- uaUGGUCUgUCACU---------------GGGUGCGuCGGG- -5'
18767 5' -56.6 NC_004683.1 + 49581 0.67 0.572655
Target:  5'- -cACCAGuaGCAGUGGCCgCAuccuCGuCGGCCa -3'
miRNA:   3'- uaUGGUC--UGUCACUGG-GU----GC-GUCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.