miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18773 5' -65.2 NC_004683.1 + 13197 1.11 0.000093
Target:  5'- cCGCCGAUGCCCCUCCGGGCAGCCGCCg -3'
miRNA:   3'- -GCGGCUACGGGGAGGCCCGUCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 28639 0.69 0.180598
Target:  5'- aGCCGAcUGCUCCgcuaCCGGGauacgcuaccGCCGCUa -3'
miRNA:   3'- gCGGCU-ACGGGGa---GGCCCgu--------CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 11803 0.68 0.189907
Target:  5'- gGCCGAgggUGUCCCaaCCGucGGCGuGCCGCUg -3'
miRNA:   3'- gCGGCU---ACGGGGa-GGC--CCGU-CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 37163 0.66 0.293846
Target:  5'- cCGCCGA-GCaUCgaugacCUGGGCAucGCCGCCc -3'
miRNA:   3'- -GCGGCUaCGgGGa-----GGCCCGU--CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 50463 0.72 0.096963
Target:  5'- aCGCgGGUGCCagCCacagUCgGGGCAGCgGCCc -3'
miRNA:   3'- -GCGgCUACGG--GG----AGgCCCGUCGgCGG- -5'
18773 5' -65.2 NC_004683.1 + 7456 0.71 0.113584
Target:  5'- gGUCGA-GCgCCUCCGGGUgcucgguGCCGUCg -3'
miRNA:   3'- gCGGCUaCGgGGAGGCCCGu------CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 1744 0.71 0.116601
Target:  5'- uCGUCGAgGCCCCaaCCGcaCGGCCGCCa -3'
miRNA:   3'- -GCGGCUaCGGGGa-GGCccGUCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 18246 0.71 0.119693
Target:  5'- aGCCGGUGaCCgugacggcggCUUCgGGGUccGGCCGCCa -3'
miRNA:   3'- gCGGCUAC-GG----------GGAGgCCCG--UCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 23806 0.7 0.143557
Target:  5'- gCGCCGGgguggUGCCgCCgCCGGuGCcGCCGCg -3'
miRNA:   3'- -GCGGCU-----ACGG-GGaGGCC-CGuCGGCGg -5'
18773 5' -65.2 NC_004683.1 + 2373 0.69 0.167394
Target:  5'- uCGUCGAUGCUCaUgCGGGguGCagCGCCu -3'
miRNA:   3'- -GCGGCUACGGGgAgGCCCguCG--GCGG- -5'
18773 5' -65.2 NC_004683.1 + 12342 0.69 0.163188
Target:  5'- aGCCuAUGCCgCCaccagcgCCGGGCaucGGCaCGCCg -3'
miRNA:   3'- gCGGcUACGG-GGa------GGCCCG---UCG-GCGG- -5'
18773 5' -65.2 NC_004683.1 + 12868 0.71 0.126107
Target:  5'- cCGCCaGcgGCguauCCCgCCGGGUAGCCGUa -3'
miRNA:   3'- -GCGG-CuaCG----GGGaGGCCCGUCGGCGg -5'
18773 5' -65.2 NC_004683.1 + 20497 0.8 0.025672
Target:  5'- cCGCCGGUGCCgCCguuggccgccCCGGGUGcGCCGCCa -3'
miRNA:   3'- -GCGGCUACGG-GGa---------GGCCCGU-CGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 28533 0.69 0.163188
Target:  5'- gCGCCGggGCaauccCCCUCCcaccaucgGGGUAGCUuGCCc -3'
miRNA:   3'- -GCGGCuaCG-----GGGAGG--------CCCGUCGG-CGG- -5'
18773 5' -65.2 NC_004683.1 + 8261 0.78 0.033788
Target:  5'- uCGCCGAUGCCCCUgCUuGGCcGCgGCCu -3'
miRNA:   3'- -GCGGCUACGGGGA-GGcCCGuCGgCGG- -5'
18773 5' -65.2 NC_004683.1 + 41923 0.71 0.126107
Target:  5'- gCGCCGcuUGCUCaUUCGGGCA-CCGCCu -3'
miRNA:   3'- -GCGGCu-ACGGGgAGGCCCGUcGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 22019 0.69 0.163188
Target:  5'- gGCCGcaccGCCaCCgCCGGGCGGaUUGCCg -3'
miRNA:   3'- gCGGCua--CGG-GGaGGCCCGUC-GGCGG- -5'
18773 5' -65.2 NC_004683.1 + 42713 0.69 0.185201
Target:  5'- cCGCCGAU-CUCgUCgCGGGCgucgucgcGGUCGCCg -3'
miRNA:   3'- -GCGGCUAcGGGgAG-GCCCG--------UCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 24676 0.75 0.066696
Target:  5'- uGCCGGgucGCCUCccaugaggCCGaGGUAGCCGCCg -3'
miRNA:   3'- gCGGCUa--CGGGGa-------GGC-CCGUCGGCGG- -5'
18773 5' -65.2 NC_004683.1 + 18386 0.71 0.116601
Target:  5'- uGCCGAUGCgCCCgucUCCGGGCccgaCUGCa -3'
miRNA:   3'- gCGGCUACG-GGG---AGGCCCGuc--GGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.