miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18775 3' -59.7 NC_004683.1 + 8562 0.66 0.546825
Target:  5'- ---aGCCGCGGgAGU-CGUGCCGGu- -3'
miRNA:   3'- gcuaCGGCGCCaUCAgGCGCGGCUcc -5'
18775 3' -59.7 NC_004683.1 + 3132 0.66 0.546825
Target:  5'- cCGAUGCCGauGUGGUCgGC-UCGAa- -3'
miRNA:   3'- -GCUACGGCgcCAUCAGgCGcGGCUcc -5'
18775 3' -59.7 NC_004683.1 + 18001 0.66 0.536608
Target:  5'- uGGUGCCGUccuggccgGGUGGgccaCUGCGCUGuguGGc -3'
miRNA:   3'- gCUACGGCG--------CCAUCa---GGCGCGGCu--CC- -5'
18775 3' -59.7 NC_004683.1 + 40225 0.66 0.526458
Target:  5'- aCGAcGCCGagcaGGcCCGCGCCGAGc -3'
miRNA:   3'- -GCUaCGGCgccaUCaGGCGCGGCUCc -5'
18775 3' -59.7 NC_004683.1 + 246 0.66 0.526458
Target:  5'- gCGGcUGCUGgGGUG--UCGaCGCCGAGGc -3'
miRNA:   3'- -GCU-ACGGCgCCAUcaGGC-GCGGCUCC- -5'
18775 3' -59.7 NC_004683.1 + 46454 0.66 0.526458
Target:  5'- gGA-GCCGCuGUuccGUCCGgcCGCCGAGa -3'
miRNA:   3'- gCUaCGGCGcCAu--CAGGC--GCGGCUCc -5'
18775 3' -59.7 NC_004683.1 + 31543 0.66 0.520403
Target:  5'- aCGA-GCCGCGGcaggaauggccguuuUGGgugaccgCCGcCGCCGuGGg -3'
miRNA:   3'- -GCUaCGGCGCC---------------AUCa------GGC-GCGGCuCC- -5'
18775 3' -59.7 NC_004683.1 + 12768 0.66 0.520403
Target:  5'- gGAUGCCGUgcccgccucggaucgGGuUAG-CCGCGCUGAu- -3'
miRNA:   3'- gCUACGGCG---------------CC-AUCaGGCGCGGCUcc -5'
18775 3' -59.7 NC_004683.1 + 7054 0.66 0.516382
Target:  5'- uCGAgaCCGCGGU-GUCCGUcgacGCCGAa- -3'
miRNA:   3'- -GCUacGGCGCCAuCAGGCG----CGGCUcc -5'
18775 3' -59.7 NC_004683.1 + 21409 0.66 0.516382
Target:  5'- ----aCCGCGGUGcuaUCCGCGCCcaguccGAGGu -3'
miRNA:   3'- gcuacGGCGCCAUc--AGGCGCGG------CUCC- -5'
18775 3' -59.7 NC_004683.1 + 44376 0.66 0.510373
Target:  5'- uCGGUGCCcgggcgaucgucggcGCGGaucgCCGCGUCGAGc -3'
miRNA:   3'- -GCUACGG---------------CGCCaucaGGCGCGGCUCc -5'
18775 3' -59.7 NC_004683.1 + 20494 0.66 0.506383
Target:  5'- cCGGUGCCGCcGUuggCCGCcCCGGGu -3'
miRNA:   3'- -GCUACGGCGcCAucaGGCGcGGCUCc -5'
18775 3' -59.7 NC_004683.1 + 32604 0.66 0.506383
Target:  5'- gGGUGCUcaagGCGGccGGUCUGCGCCa--- -3'
miRNA:   3'- gCUACGG----CGCCa-UCAGGCGCGGcucc -5'
18775 3' -59.7 NC_004683.1 + 31385 0.66 0.506383
Target:  5'- cCGAUGUgGCGGUAGgccagcaCUGCGgCGAc- -3'
miRNA:   3'- -GCUACGgCGCCAUCa------GGCGCgGCUcc -5'
18775 3' -59.7 NC_004683.1 + 8182 0.66 0.506383
Target:  5'- uCGGUGCCaGCcucggGGUcGUCgGCGCCGucGa -3'
miRNA:   3'- -GCUACGG-CG-----CCAuCAGgCGCGGCucC- -5'
18775 3' -59.7 NC_004683.1 + 46545 0.67 0.486643
Target:  5'- aCGAUGgCGCGGa--UCCGgGCCGGc- -3'
miRNA:   3'- -GCUACgGCGCCaucAGGCgCGGCUcc -5'
18775 3' -59.7 NC_004683.1 + 33934 0.67 0.486643
Target:  5'- uGAUgGCCuGCGGUGGUCC-CGgCGAc- -3'
miRNA:   3'- gCUA-CGG-CGCCAUCAGGcGCgGCUcc -5'
18775 3' -59.7 NC_004683.1 + 25147 0.67 0.471117
Target:  5'- aCGggGCCaccagguucagcagcGCGGgcacgAGaUCUGCGCCGAGu -3'
miRNA:   3'- -GCuaCGG---------------CGCCa----UC-AGGCGCGGCUCc -5'
18775 3' -59.7 NC_004683.1 + 24980 0.67 0.467274
Target:  5'- aCGAUccgGCCccuguucuacgaGUGGUucaUCCGCGCCGAGa -3'
miRNA:   3'- -GCUA---CGG------------CGCCAuc-AGGCGCGGCUCc -5'
18775 3' -59.7 NC_004683.1 + 39808 0.67 0.45774
Target:  5'- cCGGaGCCaGCGGUcgaugaguuggGGUCCGCgugagugcgcucGCCGAGa -3'
miRNA:   3'- -GCUaCGG-CGCCA-----------UCAGGCG------------CGGCUCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.