miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18777 5' -64.3 NC_004683.1 + 57015 0.72 0.124354
Target:  5'- cCCCCCGGgguCUGCguuucCGCAGGUCagaGGCUCGCg -3'
miRNA:   3'- -GGGGGCC---GGCG-----GUGUCCAG---CUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 56855 0.66 0.331705
Target:  5'- gCCCaCCGGUCGacaccUCGCGGGcauggugaaggccccCGACCUGCg -3'
miRNA:   3'- -GGG-GGCCGGC-----GGUGUCCa--------------GCUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 56504 0.69 0.201255
Target:  5'- -gCCCGGCCGCaccgcaugGCAGGUaGGCgcaCCGCa -3'
miRNA:   3'- ggGGGCCGGCGg-------UGUCCAgCUG---GGCG- -5'
18777 5' -64.3 NC_004683.1 + 55096 0.71 0.148872
Target:  5'- aUCCCCaGCCGCCgaauGCGGGaUCGAggCCGCc -3'
miRNA:   3'- -GGGGGcCGGCGG----UGUCC-AGCUg-GGCG- -5'
18777 5' -64.3 NC_004683.1 + 54393 0.66 0.336955
Target:  5'- -gCCCGGCCGCaacguccuguugGCGggccuGGUCGACgUGCu -3'
miRNA:   3'- ggGGGCCGGCGg-----------UGU-----CCAGCUGgGCG- -5'
18777 5' -64.3 NC_004683.1 + 53722 0.66 0.314163
Target:  5'- gCCUCaGCCGCgGcCAGGUCGcggcgggccugaucGCgCCGCa -3'
miRNA:   3'- gGGGGcCGGCGgU-GUCCAGC--------------UG-GGCG- -5'
18777 5' -64.3 NC_004683.1 + 53648 0.68 0.235304
Target:  5'- -aCCUGGCCGCggcugaggcugcacuCACAGaGgcgCGACuCCGCg -3'
miRNA:   3'- ggGGGCCGGCG---------------GUGUC-Ca--GCUG-GGCG- -5'
18777 5' -64.3 NC_004683.1 + 53523 0.7 0.177712
Target:  5'- gCCCUCGGCgGCC--AGGUUGucgUCCGCg -3'
miRNA:   3'- -GGGGGCCGgCGGugUCCAGCu--GGGCG- -5'
18777 5' -64.3 NC_004683.1 + 53521 0.68 0.244539
Target:  5'- -aUCCGGCuCGCgCACaAGGUCuAUCCGCc -3'
miRNA:   3'- ggGGGCCG-GCG-GUG-UCCAGcUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 52605 0.68 0.233041
Target:  5'- uUCCuuGGCCGCCuc--GUCGG-CCGCg -3'
miRNA:   3'- -GGGggCCGGCGGugucCAGCUgGGCG- -5'
18777 5' -64.3 NC_004683.1 + 52308 0.67 0.275347
Target:  5'- gCCCgGGUCGCCG-AGG-CGgACCCGa -3'
miRNA:   3'- gGGGgCCGGCGGUgUCCaGC-UGGGCg -5'
18777 5' -64.3 NC_004683.1 + 52182 0.67 0.295279
Target:  5'- uCCCUCGcagaccugacauGCgGUCACcGGUCGccuCCCGCg -3'
miRNA:   3'- -GGGGGC------------CGgCGGUGuCCAGCu--GGGCG- -5'
18777 5' -64.3 NC_004683.1 + 52067 0.68 0.238732
Target:  5'- gCCCUGGCUGaucgucgaCGCGGGaggCGACCgGUg -3'
miRNA:   3'- gGGGGCCGGCg-------GUGUCCa--GCUGGgCG- -5'
18777 5' -64.3 NC_004683.1 + 51670 0.66 0.346095
Target:  5'- -gCUCGGCCugGCgAC-GGUCGAgCCCGUc -3'
miRNA:   3'- ggGGGCCGG--CGgUGuCCAGCU-GGGCG- -5'
18777 5' -64.3 NC_004683.1 + 51195 0.66 0.349181
Target:  5'- cCCUUCGcGCCgGCCGCGccccgccaguagucGGugaacuucgcaugcUCGGCCCGCa -3'
miRNA:   3'- -GGGGGC-CGG-CGGUGU--------------CC--------------AGCUGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 51061 0.68 0.238732
Target:  5'- cCCCUCGG-CGCCuuggcgGCGGGUgCGGCCggaGCg -3'
miRNA:   3'- -GGGGGCCgGCGG------UGUCCA-GCUGGg--CG- -5'
18777 5' -64.3 NC_004683.1 + 49105 0.67 0.268946
Target:  5'- aUCCUCGGCguCGUCGacuuGGUCGACgUGCa -3'
miRNA:   3'- -GGGGGCCG--GCGGUgu--CCAGCUGgGCG- -5'
18777 5' -64.3 NC_004683.1 + 49091 0.66 0.316317
Target:  5'- uUCCCGGUCgggcuugaggGCgGCGGGaUCGcggcggGCCCGCg -3'
miRNA:   3'- gGGGGCCGG----------CGgUGUCC-AGC------UGGGCG- -5'
18777 5' -64.3 NC_004683.1 + 48718 0.68 0.233041
Target:  5'- --aCCGGCCGCCguGCAuuGGUCGcggagUCCGCg -3'
miRNA:   3'- gggGGCCGGCGG--UGU--CCAGCu----GGGCG- -5'
18777 5' -64.3 NC_004683.1 + 46680 0.66 0.33096
Target:  5'- -gCCUuGCCGUCGCGGcccUCGACCgGCa -3'
miRNA:   3'- ggGGGcCGGCGGUGUCc--AGCUGGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.