miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18779 3' -58.9 NC_004683.1 + 56153 0.66 0.564924
Target:  5'- uGCGgugccaGCGCCAgacGCGGCGGuGguuggCCUCGCa -3'
miRNA:   3'- gUGC------UGUGGU---CGCCGCU-Ca----GGAGCGg -5'
18779 3' -58.9 NC_004683.1 + 55773 0.66 0.564924
Target:  5'- gACGACGCCAGCGuuGAG-CagcggacggUCGCUg -3'
miRNA:   3'- gUGCUGUGGUCGCcgCUCaGg--------AGCGG- -5'
18779 3' -58.9 NC_004683.1 + 54691 0.69 0.398875
Target:  5'- gGCGAUcguCCGGuCGGCGAcGUCg-CGCCg -3'
miRNA:   3'- gUGCUGu--GGUC-GCCGCU-CAGgaGCGG- -5'
18779 3' -58.9 NC_004683.1 + 54060 0.69 0.356231
Target:  5'- gACGGCGCCuccGCGGUGAG-CUUgGCg -3'
miRNA:   3'- gUGCUGUGGu--CGCCGCUCaGGAgCGg -5'
18779 3' -58.9 NC_004683.1 + 53955 0.69 0.390088
Target:  5'- gGCaGCGCCAGCGGaauCGGGcCCuucucaUCGCCg -3'
miRNA:   3'- gUGcUGUGGUCGCC---GCUCaGG------AGCGG- -5'
18779 3' -58.9 NC_004683.1 + 53580 0.7 0.332228
Target:  5'- gGCaGACGCCGGCcgcaccgccGGcCGcGUCUUCGCCg -3'
miRNA:   3'- gUG-CUGUGGUCG---------CC-GCuCAGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 52750 0.66 0.57437
Target:  5'- gGCGGuccuccaUACUGGCGGCGAugcguucggcgcGuUCCUCGUCg -3'
miRNA:   3'- gUGCU-------GUGGUCGCCGCU------------C-AGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 52428 0.67 0.493222
Target:  5'- -cCGGC-CCAG-GGCGAGUaCCgccgaaCGCCg -3'
miRNA:   3'- guGCUGuGGUCgCCGCUCA-GGa-----GCGG- -5'
18779 3' -58.9 NC_004683.1 + 52255 0.67 0.493222
Target:  5'- gCGCGGCACCaaGGCGcaCGAGcUCgaCGCCu -3'
miRNA:   3'- -GUGCUGUGG--UCGCc-GCUC-AGgaGCGG- -5'
18779 3' -58.9 NC_004683.1 + 52006 0.68 0.407788
Target:  5'- -uCGACACCAucaccgaaaucuGCGGCGu-UCCcgCGCCg -3'
miRNA:   3'- guGCUGUGGU------------CGCCGCucAGGa-GCGG- -5'
18779 3' -58.9 NC_004683.1 + 51730 0.67 0.513328
Target:  5'- cUACGGCcgcgACCAGUGccGCGccGcCCUCGCCg -3'
miRNA:   3'- -GUGCUG----UGGUCGC--CGCu-CaGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 51629 0.67 0.463766
Target:  5'- uGCGuGCGCUGGCGGCGcG-CCU-GCCg -3'
miRNA:   3'- gUGC-UGUGGUCGCCGCuCaGGAgCGG- -5'
18779 3' -58.9 NC_004683.1 + 51481 0.71 0.29491
Target:  5'- cCGCGACACguGCGGUGucGcCCUgGCUc -3'
miRNA:   3'- -GUGCUGUGguCGCCGCu-CaGGAgCGG- -5'
18779 3' -58.9 NC_004683.1 + 51057 0.72 0.236114
Target:  5'- -uCGGCGCCuuGGCGGCGGGUgCg-GCCg -3'
miRNA:   3'- guGCUGUGG--UCGCCGCUCAgGagCGG- -5'
18779 3' -58.9 NC_004683.1 + 49689 0.66 0.554477
Target:  5'- -gUGuCACCAGUGGUGGcUCgUCGUCa -3'
miRNA:   3'- guGCuGUGGUCGCCGCUcAGgAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 48513 0.66 0.554477
Target:  5'- uGCGAUcaauGCC-GCGccaGuGUCCUCGCCg -3'
miRNA:   3'- gUGCUG----UGGuCGCcg-CuCAGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 48287 0.67 0.493222
Target:  5'- cCGCGuGCAUCAGCucacGGa-AGUCCUCGCg -3'
miRNA:   3'- -GUGC-UGUGGUCG----CCgcUCAGGAGCGg -5'
18779 3' -58.9 NC_004683.1 + 48255 0.71 0.302105
Target:  5'- aGCGACGCCGcCGGCGAGUggCUgCGCa -3'
miRNA:   3'- gUGCUGUGGUcGCCGCUCA--GGaGCGg -5'
18779 3' -58.9 NC_004683.1 + 48035 0.7 0.324495
Target:  5'- -gUGGCGCCGGCccaGGCGGaUCUUCGUCa -3'
miRNA:   3'- guGCUGUGGUCG---CCGCUcAGGAGCGG- -5'
18779 3' -58.9 NC_004683.1 + 47586 0.66 0.575422
Target:  5'- gACGGCugC-GUGGCGGcGUUCggGCCg -3'
miRNA:   3'- gUGCUGugGuCGCCGCU-CAGGagCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.