miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18785 5' -58.8 NC_004683.1 + 24705 0.65 0.596209
Target:  5'- -uGGGCGCCGgugaCGUCGAGGUaggagaaUGCCGGGu -3'
miRNA:   3'- acUUUGCGGC----GUGGCUCCA-------GCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 39142 0.66 0.590938
Target:  5'- cGAGGC-CCGCAUCGAGaaggacgcaccgcucGUCGCCa-- -3'
miRNA:   3'- aCUUUGcGGCGUGGCUC---------------CAGCGGccc -5'
18785 5' -58.8 NC_004683.1 + 44858 0.66 0.576226
Target:  5'- gGgcACGCgGC-CCGccGcCGCCGGGu -3'
miRNA:   3'- aCuuUGCGgCGuGGCucCaGCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 10431 0.66 0.576226
Target:  5'- cGGGAUGCCGaccagGCCGucaagaAGGUUGCCGa- -3'
miRNA:   3'- aCUUUGCGGCg----UGGC------UCCAGCGGCcc -5'
18785 5' -58.8 NC_004683.1 + 13334 0.66 0.565767
Target:  5'- cGGucGACGgCGaCGCCGAugcGGUCGaCGGGu -3'
miRNA:   3'- aCU--UUGCgGC-GUGGCU---CCAGCgGCCC- -5'
18785 5' -58.8 NC_004683.1 + 45260 0.66 0.565767
Target:  5'- -uGAACGCCGaacgACCGGGcaacGUCGCUGcGGu -3'
miRNA:   3'- acUUUGCGGCg---UGGCUC----CAGCGGC-CC- -5'
18785 5' -58.8 NC_004683.1 + 28864 0.66 0.565767
Target:  5'- cGAAAUaaGCCGCAUCGAuGUUGUgGGa -3'
miRNA:   3'- aCUUUG--CGGCGUGGCUcCAGCGgCCc -5'
18785 5' -58.8 NC_004683.1 + 53093 0.66 0.555359
Target:  5'- gGAAACGCC---CCGAGccaUCGgCCGGGg -3'
miRNA:   3'- aCUUUGCGGcguGGCUCc--AGC-GGCCC- -5'
18785 5' -58.8 NC_004683.1 + 41443 0.66 0.555359
Target:  5'- cGAAggcuauACG-CGCACCGAG---GCCGGGg -3'
miRNA:   3'- aCUU------UGCgGCGUGGCUCcagCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 44282 0.66 0.545006
Target:  5'- cGAcgcGGCGauCCGCGCCGAcGaUCGCCcGGGc -3'
miRNA:   3'- aCU---UUGC--GGCGUGGCUcC-AGCGG-CCC- -5'
18785 5' -58.8 NC_004683.1 + 31530 0.66 0.545006
Target:  5'- gGAAugGCCGUuuugggugACCGccGcCGCCGuGGg -3'
miRNA:   3'- aCUUugCGGCG--------UGGCucCaGCGGC-CC- -5'
18785 5' -58.8 NC_004683.1 + 37145 0.67 0.534717
Target:  5'- cUGGGcauCGCCGC-CCGAaccgcccCGCCGGGg -3'
miRNA:   3'- -ACUUu--GCGGCGuGGCUcca----GCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 22656 0.67 0.524498
Target:  5'- cGAcGCGCgUGCGCCGAGGUgaucaccgCGCUuGGc -3'
miRNA:   3'- aCUuUGCG-GCGUGGCUCCA--------GCGGcCC- -5'
18785 5' -58.8 NC_004683.1 + 56785 0.67 0.514353
Target:  5'- -----aGCCGCuACCGAGGUC-CCGa- -3'
miRNA:   3'- acuuugCGGCG-UGGCUCCAGcGGCcc -5'
18785 5' -58.8 NC_004683.1 + 48515 0.67 0.514353
Target:  5'- cGAucAAUGCCGCGCC-AGuGuccUCGCCGGc -3'
miRNA:   3'- aCU--UUGCGGCGUGGcUC-C---AGCGGCCc -5'
18785 5' -58.8 NC_004683.1 + 16096 0.67 0.514353
Target:  5'- cGGAACguuGCCGCGCCcuuGucGUUGCgCGGGu -3'
miRNA:   3'- aCUUUG---CGGCGUGG---CucCAGCG-GCCC- -5'
18785 5' -58.8 NC_004683.1 + 33830 0.67 0.514353
Target:  5'- -uAGAUGCU-CugCGAgcucgcgcGGUCGCCGGGa -3'
miRNA:   3'- acUUUGCGGcGugGCU--------CCAGCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 44750 0.67 0.50429
Target:  5'- aGAucAACcaCCGCGUCGuGGuUCGCCGGGg -3'
miRNA:   3'- aCU--UUGc-GGCGUGGCuCC-AGCGGCCC- -5'
18785 5' -58.8 NC_004683.1 + 1779 0.67 0.484426
Target:  5'- cGcAACGCCG-GCCGAcGUUGCCaGGGc -3'
miRNA:   3'- aCuUUGCGGCgUGGCUcCAGCGG-CCC- -5'
18785 5' -58.8 NC_004683.1 + 33536 0.68 0.478539
Target:  5'- gGAGGCGCCGUaaccgguucacugugACCG-GGUCGuaGGc -3'
miRNA:   3'- aCUUUGCGGCG---------------UGGCuCCAGCggCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.