miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18825 3' -61.3 NC_004683.1 + 56446 0.67 0.424478
Target:  5'- gUCGAUGGcCuuggUGCuGUCGUGggugaGCAGCCCg -3'
miRNA:   3'- -GGCUGCCaG----ACGcCAGCGC-----CGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 56263 0.7 0.263181
Target:  5'- gCUGACGa--UGCGGgugggCGCGGUGGCCa -3'
miRNA:   3'- -GGCUGCcagACGCCa----GCGCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 56098 0.66 0.480264
Target:  5'- gUCGACGGagacgaagUCggcgGCGGUgGUGGUGGCg- -3'
miRNA:   3'- -GGCUGCC--------AGa---CGCCAgCGCCGUCGgg -5'
18825 3' -61.3 NC_004683.1 + 53716 0.69 0.2828
Target:  5'- gCCG-CGGcCa--GGUCGCGGCGGgCCu -3'
miRNA:   3'- -GGCuGCCaGacgCCAGCGCCGUCgGG- -5'
18825 3' -61.3 NC_004683.1 + 53660 0.7 0.269595
Target:  5'- gCCGGCGGU--GCGGccggcgucugcCGCGGCGuuGCCCu -3'
miRNA:   3'- -GGCUGCCAgaCGCCa----------GCGCCGU--CGGG- -5'
18825 3' -61.3 NC_004683.1 + 52103 0.67 0.38951
Target:  5'- aCCGcaugucaGGUCUGCGaGggaCGCGcGCAGCUg -3'
miRNA:   3'- -GGCug-----CCAGACGC-Ca--GCGC-CGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 50668 0.71 0.238174
Target:  5'- uCCGAgcuccaccaggcCGGUCUGCuguggcgcuacgaGGUCGaCGGCA-CCCg -3'
miRNA:   3'- -GGCU------------GCCAGACG-------------CCAGC-GCCGUcGGG- -5'
18825 3' -61.3 NC_004683.1 + 50480 0.66 0.4519
Target:  5'- -gGAUGGUgcccCUGCGuaCGCGGguGCCa -3'
miRNA:   3'- ggCUGCCA----GACGCcaGCGCCguCGGg -5'
18825 3' -61.3 NC_004683.1 + 49423 0.68 0.340722
Target:  5'- aCCGGCcGUC-GUGGUgCG-GGCAGCCg -3'
miRNA:   3'- -GGCUGcCAGaCGCCA-GCgCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 49089 0.72 0.200601
Target:  5'- cCCGGuCGGgcuugagggCgGCGGgaUCGCGGCgGGCCCg -3'
miRNA:   3'- -GGCU-GCCa--------GaCGCC--AGCGCCG-UCGGG- -5'
18825 3' -61.3 NC_004683.1 + 47584 0.68 0.333033
Target:  5'- gCGACGG-CUGC-GUgGCGGCguucgGGCCg -3'
miRNA:   3'- gGCUGCCaGACGcCAgCGCCG-----UCGGg -5'
18825 3' -61.3 NC_004683.1 + 47416 0.71 0.232957
Target:  5'- gCGGauGUC-GCGG-CGCGGCAGCgCa -3'
miRNA:   3'- gGCUgcCAGaCGCCaGCGCCGUCGgG- -5'
18825 3' -61.3 NC_004683.1 + 46696 0.69 0.325473
Target:  5'- aUCGACGGgcgCgGCGGccUUGCcgucGCGGCCCu -3'
miRNA:   3'- -GGCUGCCa--GaCGCC--AGCGc---CGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 46688 0.69 0.310736
Target:  5'- cCCGACGG---GCGGUaCGUGGC-GCaCCg -3'
miRNA:   3'- -GGCUGCCagaCGCCA-GCGCCGuCG-GG- -5'
18825 3' -61.3 NC_004683.1 + 46070 0.68 0.364552
Target:  5'- gCCGAacagauCGGgCUGCGaGUCGaCGcguuuGCGGCCCu -3'
miRNA:   3'- -GGCU------GCCaGACGC-CAGC-GC-----CGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 46008 0.68 0.364552
Target:  5'- uUCGGCGaGgugCUGCccgaCGCGGCGGCCg -3'
miRNA:   3'- -GGCUGC-Ca--GACGcca-GCGCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 45635 0.68 0.372747
Target:  5'- aCCGugGGccagaggUUGUGGUUGUcGCGGCgCCg -3'
miRNA:   3'- -GGCugCCa------GACGCCAGCGcCGUCG-GG- -5'
18825 3' -61.3 NC_004683.1 + 45478 0.68 0.333033
Target:  5'- uCCGcUGGUUgGCGGUCaGgGGUGGCCg -3'
miRNA:   3'- -GGCuGCCAGaCGCCAG-CgCCGUCGGg -5'
18825 3' -61.3 NC_004683.1 + 45250 0.7 0.263181
Target:  5'- aCGAcCGGgcaacgucgCUGCGGUCG-GcCAGCCCg -3'
miRNA:   3'- gGCU-GCCa--------GACGCCAGCgCcGUCGGG- -5'
18825 3' -61.3 NC_004683.1 + 44778 0.67 0.41556
Target:  5'- cCCGGCGG-CgGCGGgcCGCGu--GCCCg -3'
miRNA:   3'- -GGCUGCCaGaCGCCa-GCGCcguCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.