Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18825 | 3' | -61.3 | NC_004683.1 | + | 43579 | 1.11 | 0.000235 |
Target: 5'- gCCGACGGUCUGCGGUCGCGGCAGCCCc -3' miRNA: 3'- -GGCUGCCAGACGCCAGCGCCGUCGGG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 12113 | 0.7 | 0.269595 |
Target: 5'- uCCGGCGGUagccccgcGCGGgCGCGcUGGCCCg -3' miRNA: 3'- -GGCUGCCAga------CGCCaGCGCcGUCGGG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 33515 | 0.7 | 0.276135 |
Target: 5'- gCGGCGGUCggccaGUGGU-GCGGUacgAGCUCa -3' miRNA: 3'- gGCUGCCAGa----CGCCAgCGCCG---UCGGG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 325 | 0.66 | 0.480264 |
Target: 5'- cCCGccGCGGgcagcagCgGCGGcaUCGCGGC-GCUCg -3' miRNA: 3'- -GGC--UGCCa------GaCGCC--AGCGCCGuCGGG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 44427 | 0.73 | 0.159423 |
Target: 5'- gCCGuCGGcUUGaCGGUCGaCGGCAGCgCg -3' miRNA: 3'- -GGCuGCCaGAC-GCCAGC-GCCGUCGgG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 40534 | 0.72 | 0.181262 |
Target: 5'- gCCGACacUCUGCGGUgCaugccacggGCGGguGCCCa -3' miRNA: 3'- -GGCUGccAGACGCCA-G---------CGCCguCGGG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 14306 | 0.71 | 0.232957 |
Target: 5'- gCGGCaGUgCUGCgGGUCGCGGCcacGCaCCa -3' miRNA: 3'- gGCUGcCA-GACG-CCAGCGCCGu--CG-GG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 9577 | 0.7 | 0.250725 |
Target: 5'- uCCGGCGGcaucaaCUGUGGguuCGGCAGCUCc -3' miRNA: 3'- -GGCUGCCa-----GACGCCagcGCCGUCGGG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 56263 | 0.7 | 0.263181 |
Target: 5'- gCUGACGa--UGCGGgugggCGCGGUGGCCa -3' miRNA: 3'- -GGCUGCcagACGCCa----GCGCCGUCGGg -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 53660 | 0.7 | 0.269595 |
Target: 5'- gCCGGCGGU--GCGGccggcgucugcCGCGGCGuuGCCCu -3' miRNA: 3'- -GGCUGCCAgaCGCCa----------GCGCCGU--CGGG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 40868 | 0.7 | 0.263181 |
Target: 5'- gCCGuCGGcgagCgcguCGGUCGCGGCGGUCa -3' miRNA: 3'- -GGCuGCCa---Gac--GCCAGCGCCGUCGGg -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 25716 | 0.7 | 0.256891 |
Target: 5'- aCCG-CGaUCgGCGGcagcUCGCGGUAGCUCa -3' miRNA: 3'- -GGCuGCcAGaCGCC----AGCGCCGUCGGG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 24796 | 0.82 | 0.036103 |
Target: 5'- gUCGACGcGggcgUUGCGGUCGCGGCGGCgCg -3' miRNA: 3'- -GGCUGC-Ca---GACGCCAGCGCCGUCGgG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 15893 | 0.7 | 0.263181 |
Target: 5'- uUCGGCaagGGUC-GCGGUCaCaGCGGCCCu -3' miRNA: 3'- -GGCUG---CCAGaCGCCAGcGcCGUCGGG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 41024 | 0.77 | 0.079987 |
Target: 5'- gCCGACGGgcaacgGCGG-CGCGGuCAGCUCg -3' miRNA: 3'- -GGCUGCCaga---CGCCaGCGCC-GUCGGG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 43476 | 0.7 | 0.256891 |
Target: 5'- -aGcCGGaUCgccugGCGGUUGCGGCGccGCCCc -3' miRNA: 3'- ggCuGCC-AGa----CGCCAGCGCCGU--CGGG- -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 12934 | 0.7 | 0.263181 |
Target: 5'- gCGAuucCGGUCUGCGaGUaGCGGCcuGCCg -3' miRNA: 3'- gGCU---GCCAGACGC-CAgCGCCGu-CGGg -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 3355 | 0.7 | 0.274159 |
Target: 5'- gUCGGCGGgcCUGCccguaguuugaguaGGUCGCcGCGGCCa -3' miRNA: 3'- -GGCUGCCa-GACG--------------CCAGCGcCGUCGGg -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 30845 | 0.75 | 0.113368 |
Target: 5'- gCCGACGGUgCgccggUGCGGUCGaCaGCGGCCg -3' miRNA: 3'- -GGCUGCCA-G-----ACGCCAGC-GcCGUCGGg -5' |
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18825 | 3' | -61.3 | NC_004683.1 | + | 49089 | 0.72 | 0.200601 |
Target: 5'- cCCGGuCGGgcuugagggCgGCGGgaUCGCGGCgGGCCCg -3' miRNA: 3'- -GGCU-GCCa--------GaCGCC--AGCGCCG-UCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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