miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18899 3' -53.8 NC_004683.1 + 5498 0.66 0.809089
Target:  5'- -cUCGGCGGCcgUGCaguggagcugggacgCCGAGUUCGAgGa -3'
miRNA:   3'- gaAGUCGCCG--AUGa--------------GGUUCGAGCUgC- -5'
18899 3' -53.8 NC_004683.1 + 51221 0.66 0.808133
Target:  5'- -cUCGGCGGCggUGCcCgCGAGCgcggUGACGa -3'
miRNA:   3'- gaAGUCGCCG--AUGaG-GUUCGa---GCUGC- -5'
18899 3' -53.8 NC_004683.1 + 52826 0.66 0.808133
Target:  5'- -aUCAGCGaucugaGCgACUucauucugcCCAAGCUCGGCa -3'
miRNA:   3'- gaAGUCGC------CGaUGA---------GGUUCGAGCUGc -5'
18899 3' -53.8 NC_004683.1 + 51440 0.66 0.808133
Target:  5'- -aUCgAGCGGC-ACaagcucaacgagUCCGAucuGCUCGACGg -3'
miRNA:   3'- gaAG-UCGCCGaUG------------AGGUU---CGAGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 4685 0.66 0.808133
Target:  5'- uUUCGGCGGCgucugUUCCGguguaggcgucgAGCUCGuGCGc -3'
miRNA:   3'- gAAGUCGCCGau---GAGGU------------UCGAGC-UGC- -5'
18899 3' -53.8 NC_004683.1 + 6612 0.66 0.798461
Target:  5'- --gCAGCGGCccaUCgCGaucAGCUCGGCGc -3'
miRNA:   3'- gaaGUCGCCGaugAG-GU---UCGAGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 52256 0.66 0.788611
Target:  5'- ----cGCGGCaccaagGCgcaCGAGCUCGACGc -3'
miRNA:   3'- gaaguCGCCGa-----UGag-GUUCGAGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 16038 0.66 0.788611
Target:  5'- --aCGGCGGCgcggUC-AGCUCGGCGc -3'
miRNA:   3'- gaaGUCGCCGaugaGGuUCGAGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 37312 0.66 0.788611
Target:  5'- gCUUCGGCGGCgucguugaAC-CCGucCUCGGCGc -3'
miRNA:   3'- -GAAGUCGCCGa-------UGaGGUucGAGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 56802 0.66 0.788611
Target:  5'- --cCGGCGGCUGC-UgGGGUgUCGACGc -3'
miRNA:   3'- gaaGUCGCCGAUGaGgUUCG-AGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 47954 0.66 0.778596
Target:  5'- aUUCcGCGGCaccccggggcacUACUUCGAGCgcggguUCGACGu -3'
miRNA:   3'- gAAGuCGCCG------------AUGAGGUUCG------AGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 37070 0.66 0.778596
Target:  5'- gUUCGGgCGGCgaUGC-CCAGgucaucgauGCUCGGCGg -3'
miRNA:   3'- gAAGUC-GCCG--AUGaGGUU---------CGAGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 5355 0.66 0.768425
Target:  5'- -cUCGGgGGCggGCUugaucgcgUCGAGCUCGGCc -3'
miRNA:   3'- gaAGUCgCCGa-UGA--------GGUUCGAGCUGc -5'
18899 3' -53.8 NC_004683.1 + 31341 0.66 0.768425
Target:  5'- -aUCGGCGGCaGCUCgCGguAGCUC-ACa -3'
miRNA:   3'- gaAGUCGCCGaUGAG-GU--UCGAGcUGc -5'
18899 3' -53.8 NC_004683.1 + 28113 0.67 0.747665
Target:  5'- -aUCGauGCGGCUuauuucgagcGCUCCcuGCUCGuCGg -3'
miRNA:   3'- gaAGU--CGCCGA----------UGAGGuuCGAGCuGC- -5'
18899 3' -53.8 NC_004683.1 + 46766 0.67 0.741339
Target:  5'- uCUUCGGCGGCcuguuccucggcccGCUCacgcgccucGCUCGGCGa -3'
miRNA:   3'- -GAAGUCGCCGa-------------UGAGguu------CGAGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 12859 0.67 0.715656
Target:  5'- --aCAGCGGCUcaGCgCCGGucacCUCGACGa -3'
miRNA:   3'- gaaGUCGCCGA--UGaGGUUc---GAGCUGC- -5'
18899 3' -53.8 NC_004683.1 + 25178 0.68 0.682889
Target:  5'- -aUCGGCGGCgUGCUCgGGGCcaagGACa -3'
miRNA:   3'- gaAGUCGCCG-AUGAGgUUCGag--CUGc -5'
18899 3' -53.8 NC_004683.1 + 53052 0.68 0.660777
Target:  5'- uCUUCAGCGauGCUGCg-CAGGCU-GGCGa -3'
miRNA:   3'- -GAAGUCGC--CGAUGagGUUCGAgCUGC- -5'
18899 3' -53.8 NC_004683.1 + 35646 0.68 0.660777
Target:  5'- --cCAGCaGCgauaaggaugACUCCAAGCgCGGCGa -3'
miRNA:   3'- gaaGUCGcCGa---------UGAGGUUCGaGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.